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Mutant Information

Mutant Name	FN3527-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3527-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 24408030 C-T Hetero INTERGENIC
SBS Chr1 39893269 G-A Homo INTERGENIC
SBS Chr2 13755291 C-T Homo INTERGENIC
SBS Chr2 22082995 C-T Hetero INTERGENIC
SBS Chr2 28190556 T-A Hetero INTERGENIC
SBS Chr3 497376 C-T Hetero INTERGENIC
SBS Chr3 2585447 C-G Hetero INTERGENIC
SBS Chr3 13060122 C-T Hetero INTERGENIC
SBS Chr3 24340920 G-A Homo INTERGENIC
SBS Chr4 23207402 A-T Hetero INTERGENIC
SBS Chr4 24938084 G-A Hetero INTERGENIC
SBS Chr5 5936940 T-C Homo INTERGENIC
SBS Chr5 29271273 C-T Homo INTERGENIC
SBS Chr6 12885253 C-T Hetero INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 18431329 G-A Hetero INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr8 17335687 G-A Homo INTERGENIC
SBS Chr8 25608930 T-A Homo NON_SYNONYMOUS_CODING OsKitaake08g202500
SBS Chr8 25608931 C-A Homo NON_SYNONYMOUS_CODING OsKitaake08g202500
SBS Chr8 25799137 A-G Homo INTERGENIC
SBS Chr9 3365004 A-C Hetero INTERGENIC
SBS Chr9 6966873 G-C Hetero INTERGENIC
SBS Chr9 8637475 G-A Hetero INTERGENIC
SBS Chr9 13252454 C-A Hetero INTERGENIC
SBS Chr10 5154455 G-A Hetero INTERGENIC
SBS Chr10 12042618 C-T Hetero INTERGENIC
SBS Chr11 25841932 G-T Homo INTERGENIC
SBS Chr12 5058999 C-T Hetero INTERGENIC
SBS Chr12 18920424 C-T Hetero INTERGENIC
SBS Chr12 19580941 T-C Hetero INTERGENIC
SBS Chr12 22262882 A-T Hetero INTRON
SBS Chr12 27133001 A-T Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 971425 971428 3
Deletion Chr4 4212574 4212576 2
Deletion Chr5 6041572 6041578 6
Deletion Chr8 9525524 9525539 15
Deletion Chr4 16391914 16391926 12
Deletion Chr9 17885776 17885778 2
Deletion Chr2 18095160 18095161 1
Deletion Chr10 21590001 21619000 28999 5
Deletion Chr2 28105463 28105469 6
Deletion Chr5 29273020 29273028 8
Deletion Chr1 32927226 32927232 6
Deletion Chr1 42748037 42748039 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 19004830 19004833 2
Insertion Chr7 26091602 26091606 3
Insertion Chr2 28849671 28849673 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 5302953 5817551
Inversion Chr5 5793156 5817350
Inversion Chr3 12596983 13024840
Inversion Chr3 13024849 13030016 OsKitaake03g174900
Inversion Chr6 22253423 22312125 OsKitaake06g195500
Inversion Chr6 22253425 22312125 OsKitaake06g195500

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 5302497 Chr4 23758599 OsKitaake04g150300
Translocation Chr5 5302947 Chr4 23758600 OsKitaake04g150300
Translocation Chr10 21593289 Chr5 23807227 OsKitaake10g172400
Translocation Chr10 21617804 Chr5 23807966

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	24408030	C-T	Hetero	INTERGENIC
SBS	Chr1	39893269	G-A	Homo	INTERGENIC
SBS	Chr2	13755291	C-T	Homo	INTERGENIC
SBS	Chr2	22082995	C-T	Hetero	INTERGENIC
SBS	Chr2	28190556	T-A	Hetero	INTERGENIC
SBS	Chr3	497376	C-T	Hetero	INTERGENIC
SBS	Chr3	2585447	C-G	Hetero	INTERGENIC
SBS	Chr3	13060122	C-T	Hetero	INTERGENIC
SBS	Chr3	24340920	G-A	Homo	INTERGENIC
SBS	Chr4	23207402	A-T	Hetero	INTERGENIC
SBS	Chr4	24938084	G-A	Hetero	INTERGENIC
SBS	Chr5	5936940	T-C	Homo	INTERGENIC
SBS	Chr5	29271273	C-T	Homo	INTERGENIC
SBS	Chr6	12885253	C-T	Hetero	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	18431329	G-A	Hetero	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr8	17335687	G-A	Homo	INTERGENIC
SBS	Chr8	25608930	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g202500
SBS	Chr8	25608931	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g202500
SBS	Chr8	25799137	A-G	Homo	INTERGENIC
SBS	Chr9	3365004	A-C	Hetero	INTERGENIC
SBS	Chr9	6966873	G-C	Hetero	INTERGENIC
SBS	Chr9	8637475	G-A	Hetero	INTERGENIC
SBS	Chr9	13252454	C-A	Hetero	INTERGENIC
SBS	Chr10	5154455	G-A	Hetero	INTERGENIC
SBS	Chr10	12042618	C-T	Hetero	INTERGENIC
SBS	Chr11	25841932	G-T	Homo	INTERGENIC
SBS	Chr12	5058999	C-T	Hetero	INTERGENIC
SBS	Chr12	18920424	C-T	Hetero	INTERGENIC
SBS	Chr12	19580941	T-C	Hetero	INTERGENIC
SBS	Chr12	22262882	A-T	Hetero	INTRON
SBS	Chr12	27133001	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	971425	971428	3
Deletion	Chr4	4212574	4212576	2
Deletion	Chr5	6041572	6041578	6
Deletion	Chr8	9525524	9525539	15
Deletion	Chr4	16391914	16391926	12
Deletion	Chr9	17885776	17885778	2
Deletion	Chr2	18095160	18095161	1
Deletion	Chr10	21590001	21619000	28999	5
Deletion	Chr2	28105463	28105469	6
Deletion	Chr5	29273020	29273028	8
Deletion	Chr1	32927226	32927232	6
Deletion	Chr1	42748037	42748039	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5302953	5817551
Inversion	Chr5	5793156	5817350
Inversion	Chr3	12596983	13024840
Inversion	Chr3	13024849	13030016	OsKitaake03g174900
Inversion	Chr6	22253423	22312125	OsKitaake06g195500
Inversion	Chr6	22253425	22312125	OsKitaake06g195500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes