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Mutant Information

Mutant Name	FN3528-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3528-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 113543 T-A Hetero INTERGENIC
SBS Chr1 113544 C-A Hetero INTERGENIC
SBS Chr1 5064826 A-T Hetero UTR_5_PRIME
SBS Chr1 10916364 G-A Hetero INTERGENIC
SBS Chr1 10916365 C-A Hetero INTERGENIC
SBS Chr1 19391388 A-T Homo INTERGENIC
SBS Chr1 28996838 C-T Hetero UTR_3_PRIME
SBS Chr1 29076727 T-A Hetero INTERGENIC
SBS Chr2 9406228 C-G Hetero INTERGENIC
SBS Chr2 9517469 T-C Hetero INTERGENIC
SBS Chr2 19303478 G-T Hetero INTERGENIC
SBS Chr2 20114532 A-G Homo INTERGENIC
SBS Chr2 21665840 C-T Hetero INTRON
SBS Chr2 28686364 G-A Hetero INTRON
SBS Chr3 8346955 C-A Hetero INTRON
SBS Chr3 8346956 G-A Hetero INTRON
SBS Chr3 14933639 G-A Hetero INTERGENIC
SBS Chr3 16873302 G-A Hetero INTERGENIC
SBS Chr3 19562582 T-G Hetero INTERGENIC
SBS Chr3 23416623 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g252300
SBS Chr4 1555017 G-A Hetero INTERGENIC
SBS Chr4 8004736 G-A Homo INTERGENIC
SBS Chr4 11879740 C-G Hetero INTERGENIC
SBS Chr4 14050591 G-A Hetero INTERGENIC
SBS Chr4 30002992 A-T Hetero INTRON
SBS Chr5 10425222 C-T Hetero INTERGENIC
SBS Chr5 11942415 G-C Hetero INTERGENIC
SBS Chr5 12109408 C-T Hetero INTERGENIC
SBS Chr5 27836405 C-A Hetero INTERGENIC
SBS Chr5 30166877 T-A Hetero INTERGENIC
SBS Chr6 9506436 C-G Homo SPLICE_SITE_REGION
SBS Chr6 11674718 C-A Hetero INTRON
SBS Chr6 12827238 C-T Hetero SPLICE_SITE_REGION
SBS Chr6 27243305 G-A Homo INTERGENIC
SBS Chr6 29605310 C-T Homo INTERGENIC
SBS Chr7 963555 G-T Hetero INTERGENIC
SBS Chr7 963556 A-T Hetero INTERGENIC
SBS Chr7 10033673 G-C Homo INTERGENIC
SBS Chr7 16203379 T-A Homo INTERGENIC
SBS Chr8 5149280 G-A Hetero INTERGENIC
SBS Chr8 9048531 T-A Hetero INTERGENIC
SBS Chr8 25922813 C-T Hetero INTERGENIC
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr9 12728700 T-G Homo INTERGENIC
SBS Chr9 12829393 C-A Hetero UTR_3_PRIME
SBS Chr10 7245431 G-T Hetero INTERGENIC
SBS Chr10 15483005 A-G Hetero INTRON
SBS Chr11 10436706 T-C Hetero INTERGENIC
SBS Chr11 14508054 C-T Hetero INTERGENIC
SBS Chr11 18759825 A-T Hetero INTERGENIC
SBS Chr12 3350847 G-A Hetero INTERGENIC
SBS Chr12 3569849 G-T Hetero INTERGENIC
SBS Chr12 10538507 A-G Hetero INTERGENIC
SBS Chr12 10919895 C-T Hetero INTERGENIC
SBS Chr12 11272879 C-T Hetero INTERGENIC
SBS Chr12 17812090 C-A Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 611001 834000 222999 34
Deletion Chr3 1500683 1500684 1
Deletion Chr5 2878396 2878397 1
Deletion Chr11 3652802 3652812 10 OsKitaake11g050600
Deletion Chr4 4474468 4474477 9
Deletion Chr11 4855768 4855781 13
Deletion Chr6 7537491 7537498 7
Deletion Chr1 9613040 9613043 3
Deletion Chr9 9728678 9728680 2
Deletion Chr9 9820562 9820563 1
Deletion Chr5 9904830 9904844 14
Deletion Chr10 13563375 13563389 14
Deletion Chr8 15494883 15494894 11
Deletion Chr7 17030064 17030066 2
Deletion Chr8 18035267 18035280 13
Deletion Chr2 18053432 18053445 13
Deletion Chr1 23408853 23408876 23
Deletion Chr2 23575365 23575366 1 OsKitaake02g231200
Deletion Chr6 23620812 23620814 2
Deletion Chr1 25135582 25135584 2
Deletion Chr4 29470751 29470753 2
Deletion Chr11 29598387 29598389 2
Deletion Chr6 29805793 29805796 3
Deletion Chr2 30320052 30320055 3
Deletion Chr2 33688139 33688143 4

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30903053 30903055 1
Insertion Chr2 7453472 7453475 2
Insertion Chr3 113783 113786 2
Insertion Chr6 12338848 12338851 2
Insertion Chr6 29466295 29466298 2
Insertion Chr10 3601920 3601922 1
Insertion Chr4 22525662 22525665 2
Insertion Chr5 12527862 12527864 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 15793811 16774537
Inversion Chr7 15793813 16774543

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	113543	T-A	Hetero	INTERGENIC
SBS	Chr1	113544	C-A	Hetero	INTERGENIC
SBS	Chr1	5064826	A-T	Hetero	UTR_5_PRIME
SBS	Chr1	10916364	G-A	Hetero	INTERGENIC
SBS	Chr1	10916365	C-A	Hetero	INTERGENIC
SBS	Chr1	19391388	A-T	Homo	INTERGENIC
SBS	Chr1	28996838	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	29076727	T-A	Hetero	INTERGENIC
SBS	Chr2	9406228	C-G	Hetero	INTERGENIC
SBS	Chr2	9517469	T-C	Hetero	INTERGENIC
SBS	Chr2	19303478	G-T	Hetero	INTERGENIC
SBS	Chr2	20114532	A-G	Homo	INTERGENIC
SBS	Chr2	21665840	C-T	Hetero	INTRON
SBS	Chr2	28686364	G-A	Hetero	INTRON
SBS	Chr3	8346955	C-A	Hetero	INTRON
SBS	Chr3	8346956	G-A	Hetero	INTRON
SBS	Chr3	14933639	G-A	Hetero	INTERGENIC
SBS	Chr3	16873302	G-A	Hetero	INTERGENIC
SBS	Chr3	19562582	T-G	Hetero	INTERGENIC
SBS	Chr3	23416623	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g252300
SBS	Chr4	1555017	G-A	Hetero	INTERGENIC
SBS	Chr4	8004736	G-A	Homo	INTERGENIC
SBS	Chr4	11879740	C-G	Hetero	INTERGENIC
SBS	Chr4	14050591	G-A	Hetero	INTERGENIC
SBS	Chr4	30002992	A-T	Hetero	INTRON
SBS	Chr5	10425222	C-T	Hetero	INTERGENIC
SBS	Chr5	11942415	G-C	Hetero	INTERGENIC
SBS	Chr5	12109408	C-T	Hetero	INTERGENIC
SBS	Chr5	27836405	C-A	Hetero	INTERGENIC
SBS	Chr5	30166877	T-A	Hetero	INTERGENIC
SBS	Chr6	9506436	C-G	Homo	SPLICE_SITE_REGION
SBS	Chr6	11674718	C-A	Hetero	INTRON
SBS	Chr6	12827238	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr6	27243305	G-A	Homo	INTERGENIC
SBS	Chr6	29605310	C-T	Homo	INTERGENIC
SBS	Chr7	963555	G-T	Hetero	INTERGENIC
SBS	Chr7	963556	A-T	Hetero	INTERGENIC
SBS	Chr7	10033673	G-C	Homo	INTERGENIC
SBS	Chr7	16203379	T-A	Homo	INTERGENIC
SBS	Chr8	5149280	G-A	Hetero	INTERGENIC
SBS	Chr8	9048531	T-A	Hetero	INTERGENIC
SBS	Chr8	25922813	C-T	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr9	12728700	T-G	Homo	INTERGENIC
SBS	Chr9	12829393	C-A	Hetero	UTR_3_PRIME
SBS	Chr10	7245431	G-T	Hetero	INTERGENIC
SBS	Chr10	15483005	A-G	Hetero	INTRON
SBS	Chr11	10436706	T-C	Hetero	INTERGENIC
SBS	Chr11	14508054	C-T	Hetero	INTERGENIC
SBS	Chr11	18759825	A-T	Hetero	INTERGENIC
SBS	Chr12	3350847	G-A	Hetero	INTERGENIC
SBS	Chr12	3569849	G-T	Hetero	INTERGENIC
SBS	Chr12	10538507	A-G	Hetero	INTERGENIC
SBS	Chr12	10919895	C-T	Hetero	INTERGENIC
SBS	Chr12	11272879	C-T	Hetero	INTERGENIC
SBS	Chr12	17812090	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	611001	834000	222999	34
Deletion	Chr3	1500683	1500684	1
Deletion	Chr5	2878396	2878397	1
Deletion	Chr11	3652802	3652812	10	OsKitaake11g050600
Deletion	Chr4	4474468	4474477	9
Deletion	Chr11	4855768	4855781	13
Deletion	Chr6	7537491	7537498	7
Deletion	Chr1	9613040	9613043	3
Deletion	Chr9	9728678	9728680	2
Deletion	Chr9	9820562	9820563	1
Deletion	Chr5	9904830	9904844	14
Deletion	Chr10	13563375	13563389	14
Deletion	Chr8	15494883	15494894	11
Deletion	Chr7	17030064	17030066	2
Deletion	Chr8	18035267	18035280	13
Deletion	Chr2	18053432	18053445	13
Deletion	Chr1	23408853	23408876	23
Deletion	Chr2	23575365	23575366	1	OsKitaake02g231200
Deletion	Chr6	23620812	23620814	2
Deletion	Chr1	25135582	25135584	2
Deletion	Chr4	29470751	29470753	2
Deletion	Chr11	29598387	29598389	2
Deletion	Chr6	29805793	29805796	3
Deletion	Chr2	30320052	30320055	3
Deletion	Chr2	33688139	33688143	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15793811	16774537
Inversion	Chr7	15793813	16774543

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes