Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3529-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3529-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3975680 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 15864017 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 21165667 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29297358 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 35405898 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 1570344 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18406705 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28003497 | C-G | Hetero | INTRON | |
| SBS | Chr2 | 31666992 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3310776 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8614377 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g043800 |
| SBS | Chr4 | 16274584 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 25233808 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10823944 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 21061624 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 22970607 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26047041 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 2802909 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2802911 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3109502 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g035000 |
| SBS | Chr8 | 7647278 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15020913 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 17322944 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 20059687 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1904189 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 1319958 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4801920 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8764739 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17393586 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 1345089 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 2099475 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 2880692 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7682278 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19063815 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19064099 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23978950 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24327136 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g195500 |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 681711 | 681723 | 12 | |
| Deletion | Chr3 | 2912493 | 2912496 | 3 | OsKitaake03g040900 |
| Deletion | Chr11 | 8399179 | 8399180 | 1 | |
| Deletion | Chr2 | 13294001 | 13315000 | 20999 | 4 |
| Deletion | Chr11 | 15635285 | 15635287 | 2 | |
| Deletion | Chr9 | 16197759 | 16197761 | 2 | |
| Deletion | Chr7 | 17541201 | 17541203 | 2 | |
| Deletion | Chr6 | 17649137 | 17649140 | 3 | |
| Deletion | Chr10 | 23718001 | 23731000 | 12999 | |
| Deletion | Chr5 | 23794741 | 23794742 | 1 | |
| Deletion | Chr4 | 32983755 | 32983763 | 8 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 16664622 | 16664625 | 2 | |
| Insertion | Chr9 | 21086414 | 21086417 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 38041879 | 38129768 | OsKitaake01g406700 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 8843215 | Chr1 | 40656781 | 2 |
| Translocation | Chr5 | 8845951 | Chr1 | 38129763 | OsKitaake01g406700 |
| Translocation | Chr5 | 10693455 | Chr4 | 32995443 | OsKitaake04g267400 |