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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN3530-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3530-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13700419 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g159150
SBS Chr2 1114323 C-A Hetero INTRON
SBS Chr2 9310078 C-T Homo INTERGENIC
SBS Chr2 10376385 C-T Hetero INTERGENIC
SBS Chr2 18872721 C-T Hetero INTERGENIC
SBS Chr2 35327079 A-G Hetero INTERGENIC
SBS Chr2 35985733 C-T Hetero INTERGENIC
SBS Chr3 19120177 G-C Homo INTERGENIC
SBS Chr3 31662403 C-T Hetero INTERGENIC
SBS Chr4 1622981 G-T Hetero INTRON
SBS Chr4 11642082 A-G Hetero INTERGENIC
SBS Chr4 21784492 T-C Hetero INTERGENIC
SBS Chr4 36596050 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g318600
SBS Chr5 28179052 C-T Homo INTERGENIC
SBS Chr6 2505254 C-A Hetero INTERGENIC
SBS Chr6 2505255 G-A Hetero INTERGENIC
SBS Chr6 8119433 C-T Hetero INTERGENIC
SBS Chr6 12893715 G-C Hetero INTERGENIC
SBS Chr7 1972767 G-A Homo INTERGENIC
SBS Chr7 25842591 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 5779347 T-A Homo UTR_3_PRIME
SBS Chr8 5779348 C-A Homo UTR_3_PRIME
SBS Chr8 12885657 T-A Homo INTERGENIC
SBS Chr8 12885658 T-C Homo INTERGENIC
SBS Chr8 25391574 G-A Hetero INTERGENIC
SBS Chr8 25673901 G-A Hetero INTERGENIC
SBS Chr9 3144274 T-G Homo INTERGENIC
SBS Chr9 11978686 A-G Hetero INTERGENIC
SBS Chr9 13529603 G-T Hetero INTERGENIC
SBS Chr9 22755196 T-C Hetero INTRON
SBS Chr10 9612573 G-A Hetero INTERGENIC
SBS Chr10 9751533 G-A Hetero INTERGENIC
SBS Chr11 8158514 A-T Homo INTERGENIC
SBS Chr11 8158522 C-T Homo INTERGENIC
SBS Chr11 13480011 T-G Homo INTERGENIC
SBS Chr12 9686066 G-A Hetero INTERGENIC
SBS Chr12 11776334 C-T Hetero INTERGENIC
SBS Chr12 14656227 T-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 95836 95837 1 OsKitaake02g001500
Deletion Chr9 642977 642978 1
Deletion Chr9 1219646 1219657 11
Deletion Chr5 2365076 2365080 4
Deletion Chr9 4994991 4994992 1
Deletion Chr11 5430485 5430493 8
Deletion Chr11 8015663 8015665 2
Deletion Chr11 8154910 8154911 1
Deletion Chr11 9545834 9545838 4
Deletion Chr2 10647001 10693000 45999 OsKitaake02g125800
Deletion Chr11 12227088 12227091 3
Deletion Chr1 14415001 14780000 364999 34
Deletion Chr1 16968661 16968664 3
Deletion Chr12 17378041 17378054 13
Deletion Chr5 19079216 19079217 1
Deletion Chr4 21121372 21121373 1
Deletion Chr3 23796404 23796410 6 OsKitaake03g255500
Deletion Chr3 36008810 36008832 22

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 24257717 24257722 4
Insertion Chr10 351023 351027 3
Insertion Chr12 17238951 17238954 2
Insertion Chr3 19362193 19362195 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3701367 3950133
Inversion Chr11 6326594 6385561
Inversion Chr11 6326606 6385633
Inversion Chr11 12849657 12853255
Inversion Chr11 12849683 12853265
Inversion Chr5 28610353 29185769 OsKitaake05g267900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12849685 Chr2 1971321
Translocation Chr7 20489877 Chr6 23252779
Translocation Chr7 20489892 Chr6 23252165

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13700419	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g159150
SBS	Chr2	1114323	C-A	Hetero	INTRON
SBS	Chr2	9310078	C-T	Homo	INTERGENIC
SBS	Chr2	10376385	C-T	Hetero	INTERGENIC
SBS	Chr2	18872721	C-T	Hetero	INTERGENIC
SBS	Chr2	35327079	A-G	Hetero	INTERGENIC
SBS	Chr2	35985733	C-T	Hetero	INTERGENIC
SBS	Chr3	19120177	G-C	Homo	INTERGENIC
SBS	Chr3	31662403	C-T	Hetero	INTERGENIC
SBS	Chr4	1622981	G-T	Hetero	INTRON
SBS	Chr4	11642082	A-G	Hetero	INTERGENIC
SBS	Chr4	21784492	T-C	Hetero	INTERGENIC
SBS	Chr4	36596050	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g318600
SBS	Chr5	28179052	C-T	Homo	INTERGENIC
SBS	Chr6	2505254	C-A	Hetero	INTERGENIC
SBS	Chr6	2505255	G-A	Hetero	INTERGENIC
SBS	Chr6	8119433	C-T	Hetero	INTERGENIC
SBS	Chr6	12893715	G-C	Hetero	INTERGENIC
SBS	Chr7	1972767	G-A	Homo	INTERGENIC
SBS	Chr7	25842591	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	5779347	T-A	Homo	UTR_3_PRIME
SBS	Chr8	5779348	C-A	Homo	UTR_3_PRIME
SBS	Chr8	12885657	T-A	Homo	INTERGENIC
SBS	Chr8	12885658	T-C	Homo	INTERGENIC
SBS	Chr8	25391574	G-A	Hetero	INTERGENIC
SBS	Chr8	25673901	G-A	Hetero	INTERGENIC
SBS	Chr9	3144274	T-G	Homo	INTERGENIC
SBS	Chr9	11978686	A-G	Hetero	INTERGENIC
SBS	Chr9	13529603	G-T	Hetero	INTERGENIC
SBS	Chr9	22755196	T-C	Hetero	INTRON
SBS	Chr10	9612573	G-A	Hetero	INTERGENIC
SBS	Chr10	9751533	G-A	Hetero	INTERGENIC
SBS	Chr11	8158514	A-T	Homo	INTERGENIC
SBS	Chr11	8158522	C-T	Homo	INTERGENIC
SBS	Chr11	13480011	T-G	Homo	INTERGENIC
SBS	Chr12	9686066	G-A	Hetero	INTERGENIC
SBS	Chr12	11776334	C-T	Hetero	INTERGENIC
SBS	Chr12	14656227	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	95836	95837	1	OsKitaake02g001500
Deletion	Chr9	642977	642978	1
Deletion	Chr9	1219646	1219657	11
Deletion	Chr5	2365076	2365080	4
Deletion	Chr9	4994991	4994992	1
Deletion	Chr11	5430485	5430493	8
Deletion	Chr11	8015663	8015665	2
Deletion	Chr11	8154910	8154911	1
Deletion	Chr11	9545834	9545838	4
Deletion	Chr2	10647001	10693000	45999	OsKitaake02g125800
Deletion	Chr11	12227088	12227091	3
Deletion	Chr1	14415001	14780000	364999	34
Deletion	Chr1	16968661	16968664	3
Deletion	Chr12	17378041	17378054	13
Deletion	Chr5	19079216	19079217	1
Deletion	Chr4	21121372	21121373	1
Deletion	Chr3	23796404	23796410	6	OsKitaake03g255500
Deletion	Chr3	36008810	36008832	22

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3701367	3950133
Inversion	Chr11	6326594	6385561
Inversion	Chr11	6326606	6385633
Inversion	Chr11	12849657	12853255
Inversion	Chr11	12849683	12853265
Inversion	Chr5	28610353	29185769	OsKitaake05g267900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes