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Mutant Information

Mutant Name	FN3531-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3531-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22161936	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	29765450	C-T	Hetero	INTERGENIC
SBS	Chr1	33552256	A-C	Hetero	UTR_3_PRIME
SBS	Chr1	40440201	G-A	Homo	INTERGENIC
SBS	Chr2	7368302	G-A	Homo	INTRON
SBS	Chr2	7368303	G-A	Homo	INTRON
SBS	Chr2	15904560	G-A	Hetero	INTRON
SBS	Chr3	14283433	C-A	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Homo	INTERGENIC
SBS	Chr4	4778267	A-T	Hetero	INTERGENIC
SBS	Chr4	16767061	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g082400
SBS	Chr4	20072429	G-A	Homo	INTERGENIC
SBS	Chr5	10236201	C-T	Hetero	INTERGENIC
SBS	Chr5	13944580	G-A	Hetero	INTERGENIC
SBS	Chr5	18132759	C-G	Hetero	INTERGENIC
SBS	Chr5	20086763	G-A	Hetero	INTERGENIC
SBS	Chr6	7652493	C-A	Hetero	INTERGENIC
SBS	Chr6	18426638	T-A	Hetero	INTERGENIC
SBS	Chr7	1125450	C-T	Homo	INTERGENIC
SBS	Chr7	1683145	C-T	Homo	INTERGENIC
SBS	Chr7	7389012	G-A	Hetero	INTERGENIC
SBS	Chr7	26340287	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	22555306	C-T	Homo	INTERGENIC
SBS	Chr8	26276939	G-A	Homo	INTRON
SBS	Chr9	18612434	G-A	Hetero	INTERGENIC
SBS	Chr10	6704564	G-A	Hetero	INTERGENIC
SBS	Chr10	8872269	C-G	Homo	INTERGENIC
SBS	Chr12	1548772	A-G	Homo	INTERGENIC
SBS	Chr12	5455463	C-T	Homo	INTERGENIC
SBS	Chr12	17380834	G-C	Hetero	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1556998	1557008	10
Deletion	Chr7	9466546	9466549	3
Deletion	Chr5	13662001	13734000	71999	5
Deletion	Chr8	20910233	20910236	3	OsKitaake08g156800
Deletion	Chr1	26588174	26588175	1
Deletion	Chr4	28511307	28511316	9
Deletion	Chr4	29418659	29418660	1
Deletion	Chr4	32197001	32218000	20999	3
Deletion	Chr4	36680678	36680691	13
Deletion	Chr1	40312222	40312224	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr9	17425654	17425658	3
Insertion	Chr8	8960664	8960673	8

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13047370	13419338	2
Inversion	Chr6	13423452	13922328	OsKitaake06g141400
Inversion	Chr10	21844351	22274587	OsKitaake10g182200
Inversion	Chr3	30556794	31290967
Inversion	Chr3	30556798	31291121
Inversion	Chr4	31920822	32198043	2
Inversion	Chr4	31920828	32217790	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1180631	Chr6	13050630	OsKitaake06g138600
Translocation	Chr10	1180647	Chr6	13047381	OsKitaake06g138600
Translocation	Chr9	9849674	Chr5	22283816	OsKitaake05g182200
Translocation	Chr9	9850359	Chr5	22283801	OsKitaake05g182200
Translocation	Chr12	11834901	Chr1	19342552
Translocation	Chr6	13422253	Chr2	27641395	OsKitaake06g141400
Translocation	Chr10	21523057	Chr6	13423448	OsKitaake06g141400
Translocation	Chr10	21844335	Chr2	27641301