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| Mutant Information |
|---|
| Mutant Name | FN3532-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3532-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2612424 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 10526408 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 10526416 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 15569720 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15999604 | C-A | Homo | UTR_5_PRIME | |
| SBS | Chr1 | 41303821 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 2682819 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24352658 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g241500 |
| SBS | Chr3 | 12080288 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 12165140 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17819860 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 18461415 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 415408 | C-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr6 | 18625234 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 26609996 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 455027 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 455029 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23665835 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3821590 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8909010 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8909013 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 9220349 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g084000 |
| SBS | Chr8 | 16070110 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 17196053 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1060225 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13047647 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 14601813 | C-T | Homo | INTRON | |
| SBS | Chr12 | 9123086 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20188317 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26753865 | G-T | Hetero | INTRON |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 184068 | 184084 | 16 | |
| Deletion | Chr9 | 565710 | 565712 | 2 | |
| Deletion | Chr9 | 1195859 | 1195861 | 2 | |
| Deletion | Chr3 | 1414480 | 1414482 | 2 | |
| Deletion | Chr10 | 2139430 | 2139431 | 1 | |
| Deletion | Chr11 | 4938413 | 4938416 | 3 | |
| Deletion | Chr8 | 9238452 | 9238480 | 28 | |
| Deletion | Chr6 | 9825348 | 9825372 | 24 | |
| Deletion | Chr12 | 10690001 | 10718000 | 27999 | |
| Deletion | Chr6 | 11842902 | 11842904 | 2 | |
| Deletion | Chr1 | 14613821 | 14613827 | 6 | |
| Deletion | Chr2 | 19645312 | 19645318 | 6 | |
| Deletion | Chr11 | 20217955 | 20217984 | 29 | |
| Deletion | Chr2 | 21476296 | 21476309 | 13 | OsKitaake02g207400 |
| Deletion | Chr5 | 21551001 | 21560000 | 8999 | OsKitaake05g175100 |
| Deletion | Chr11 | 22705883 | 22705886 | 3 | OsKitaake11g180000 |
| Deletion | Chr7 | 23426614 | 23426618 | 4 | |
| Deletion | Chr11 | 23862927 | 23862943 | 16 | |
| Deletion | Chr4 | 28425205 | 28425213 | 8 | OsKitaake04g211800 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 20803850 | 20803855 | 4 | |
| Insertion | Chr12 | 25899502 | 25899505 | 2 | |
| Insertion | Chr11 | 14261831 | 14261834 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 272120 | Chr1 | 44229595 | OsKitaake01g494300 |
| Translocation | Chr3 | 272121 | Chr1 | 44229604 | OsKitaake01g494300 |
| Translocation | Chr5 | 22405885 | Chr2 | 13545458 | OsKitaake05g183400 |
| Translocation | Chr5 | 22405886 | Chr2 | 13545513 | OsKitaake05g183400 |