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| Mutant Information |
|---|
| Mutant Name | FN3533-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3533-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8205340 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 13538522 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 30106454 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g305700 |
| SBS | Chr3 | 26246844 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 34921426 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6928829 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 15828596 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 25395666 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 898180 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4554062 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4554063 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15150911 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17963151 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24944197 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13879139 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18220160 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g135301 |
| SBS | Chr9 | 12734432 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15927302 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 20916363 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 1064368 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 29074368 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13345832 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15238112 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 21233585 | C-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2988560 | 2988561 | 1 | |
| Deletion | Chr5 | 4881419 | 4881430 | 11 | |
| Deletion | Chr5 | 5360739 | 5360745 | 6 | |
| Deletion | Chr5 | 5597034 | 5597037 | 3 | |
| Deletion | Chr4 | 6378295 | 6378296 | 1 | |
| Deletion | Chr2 | 8529122 | 8529127 | 5 | OsKitaake02g108400 |
| Deletion | Chr4 | 11736595 | 11736605 | 10 | |
| Deletion | Chr2 | 13839618 | 13839620 | 2 | |
| Deletion | Chr11 | 14137769 | 14137775 | 6 | |
| Deletion | Chr8 | 15633442 | 15633443 | 1 | |
| Deletion | Chr10 | 20378974 | 20378983 | 9 | |
| Deletion | Chr6 | 23033833 | 23033967 | 134 | |
| Deletion | Chr7 | 25970969 | 25970973 | 4 | |
| Deletion | Chr2 | 31281451 | 31281452 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 10666261 | 10666264 | 2 | |
| Insertion | Chr6 | 26744194 | 26744197 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 22392058 | 22550417 | |
| Inversion | Chr5 | 22392060 | 22550415 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 5157142 | Chr3 | 8480273 | OsKitaake03g116200 |