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Mutant Information

Mutant Name	FN3534-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3534-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8072637 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g101200
SBS Chr1 12695472 C-T Homo INTRON
SBS Chr1 25605022 G-C Homo UTR_5_PRIME
SBS Chr2 6760040 G-A Homo INTERGENIC
SBS Chr2 12596677 G-A Hetero INTERGENIC
SBS Chr3 9507519 C-G Homo INTRON
SBS Chr3 16028093 C-T Homo INTERGENIC
SBS Chr3 21647719 G-A Hetero INTERGENIC
SBS Chr3 23390882 G-A Hetero INTERGENIC
SBS Chr3 27420197 T-G Homo INTRON
SBS Chr4 12079594 G-T Hetero START_GAINED
SBS Chr4 15170594 T-C Hetero INTERGENIC
SBS Chr4 26395362 A-G Homo INTERGENIC
SBS Chr5 281314 C-T Hetero INTRON
SBS Chr5 12416205 C-T Hetero INTERGENIC
SBS Chr5 13416958 C-T Hetero UTR_5_PRIME
SBS Chr5 17526032 G-C Homo INTERGENIC
SBS Chr5 18861169 G-T Homo INTRON
SBS Chr5 20738723 A-T Hetero INTERGENIC
SBS Chr6 16287515 T-C Hetero INTERGENIC
SBS Chr6 18836344 G-T Homo INTERGENIC
SBS Chr7 10649231 G-A Homo INTRON
SBS Chr7 29519407 T-C Homo INTRON
SBS Chr8 805676 G-A Hetero INTERGENIC
SBS Chr8 1192741 C-A Homo INTERGENIC
SBS Chr8 16062978 C-T Hetero INTERGENIC
SBS Chr8 20421430 T-G Hetero INTRON
SBS Chr8 22079042 G-A Hetero INTRON
SBS Chr8 22355110 G-A Hetero INTERGENIC
SBS Chr9 11528608 C-T Hetero INTERGENIC
SBS Chr9 15292182 A-C Hetero UTR_3_PRIME
SBS Chr10 118567 T-A Hetero INTRON
SBS Chr10 1870388 A-G Hetero INTRON
SBS Chr11 14841389 G-A Hetero INTERGENIC
SBS Chr11 21847354 G-A Hetero INTERGENIC
SBS Chr12 2618016 G-A Hetero INTERGENIC
SBS Chr12 25653022 A-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2702007 2702009 2
Deletion Chr10 3618492 3618493 1
Deletion Chr9 6341742 6341744 2
Deletion Chr1 14074743 14074754 11
Deletion Chr9 15656901 15656902 1
Deletion Chr9 18109535 18109538 3
Deletion Chr12 19933620 19933622 2
Deletion Chr6 19994684 19994701 17
Deletion Chr4 20880069 20880070 1
Deletion Chr11 22815932 22815935 3
Deletion Chr7 22869917 22869919 2 OsKitaake07g196500
Deletion Chr5 25147330 25147338 8
Deletion Chr1 26505551 26505559 8 OsKitaake01g258100
Deletion Chr11 27408783 27408788 5
Deletion Chr6 30465739 30465740 1 2
Deletion Chr1 42139669 42139671 2
Deletion Chr1 43332139 43332147 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13135367 13135372 4
Insertion Chr3 13767211 13767214 2
Insertion Chr9 17379605 17379609 3
Insertion Chr12 16765721 16765725 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 20785419 20815138 OsKitaake10g160300
Inversion Chr3 22438316 22590753
Inversion Chr3 22438323 22590754

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1929880 Chr5 23417314 OsKitaake05g196000
Translocation Chr12 1935766 Chr3 11474307
Translocation Chr11 21771088 Chr5 24871939

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8072637	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g101200
SBS	Chr1	12695472	C-T	Homo	INTRON
SBS	Chr1	25605022	G-C	Homo	UTR_5_PRIME
SBS	Chr2	6760040	G-A	Homo	INTERGENIC
SBS	Chr2	12596677	G-A	Hetero	INTERGENIC
SBS	Chr3	9507519	C-G	Homo	INTRON
SBS	Chr3	16028093	C-T	Homo	INTERGENIC
SBS	Chr3	21647719	G-A	Hetero	INTERGENIC
SBS	Chr3	23390882	G-A	Hetero	INTERGENIC
SBS	Chr3	27420197	T-G	Homo	INTRON
SBS	Chr4	12079594	G-T	Hetero	START_GAINED
SBS	Chr4	15170594	T-C	Hetero	INTERGENIC
SBS	Chr4	26395362	A-G	Homo	INTERGENIC
SBS	Chr5	281314	C-T	Hetero	INTRON
SBS	Chr5	12416205	C-T	Hetero	INTERGENIC
SBS	Chr5	13416958	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	17526032	G-C	Homo	INTERGENIC
SBS	Chr5	18861169	G-T	Homo	INTRON
SBS	Chr5	20738723	A-T	Hetero	INTERGENIC
SBS	Chr6	16287515	T-C	Hetero	INTERGENIC
SBS	Chr6	18836344	G-T	Homo	INTERGENIC
SBS	Chr7	10649231	G-A	Homo	INTRON
SBS	Chr7	29519407	T-C	Homo	INTRON
SBS	Chr8	805676	G-A	Hetero	INTERGENIC
SBS	Chr8	1192741	C-A	Homo	INTERGENIC
SBS	Chr8	16062978	C-T	Hetero	INTERGENIC
SBS	Chr8	20421430	T-G	Hetero	INTRON
SBS	Chr8	22079042	G-A	Hetero	INTRON
SBS	Chr8	22355110	G-A	Hetero	INTERGENIC
SBS	Chr9	11528608	C-T	Hetero	INTERGENIC
SBS	Chr9	15292182	A-C	Hetero	UTR_3_PRIME
SBS	Chr10	118567	T-A	Hetero	INTRON
SBS	Chr10	1870388	A-G	Hetero	INTRON
SBS	Chr11	14841389	G-A	Hetero	INTERGENIC
SBS	Chr11	21847354	G-A	Hetero	INTERGENIC
SBS	Chr12	2618016	G-A	Hetero	INTERGENIC
SBS	Chr12	25653022	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2702007	2702009	2
Deletion	Chr10	3618492	3618493	1
Deletion	Chr9	6341742	6341744	2
Deletion	Chr1	14074743	14074754	11
Deletion	Chr9	15656901	15656902	1
Deletion	Chr9	18109535	18109538	3
Deletion	Chr12	19933620	19933622	2
Deletion	Chr6	19994684	19994701	17
Deletion	Chr4	20880069	20880070	1
Deletion	Chr11	22815932	22815935	3
Deletion	Chr7	22869917	22869919	2	OsKitaake07g196500
Deletion	Chr5	25147330	25147338	8
Deletion	Chr1	26505551	26505559	8	OsKitaake01g258100
Deletion	Chr11	27408783	27408788	5
Deletion	Chr6	30465739	30465740	1	2
Deletion	Chr1	42139669	42139671	2
Deletion	Chr1	43332139	43332147	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	20785419	20815138	OsKitaake10g160300
Inversion	Chr3	22438316	22590753
Inversion	Chr3	22438323	22590754

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes