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Mutant Information

Mutant Name	FN3535-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3535-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5522993 A-T Homo INTERGENIC
SBS Chr1 11084049 C-T Hetero INTERGENIC
SBS Chr1 11471613 A-C Hetero INTERGENIC
SBS Chr1 19183105 G-A Hetero INTERGENIC
SBS Chr1 30610039 G-A Hetero INTERGENIC
SBS Chr2 364038 T-C Hetero INTERGENIC
SBS Chr2 10170078 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g122200
SBS Chr2 19742128 G-A Hetero INTERGENIC
SBS Chr3 5108363 G-A Hetero INTERGENIC
SBS Chr3 17632149 T-A Hetero INTERGENIC
SBS Chr3 17632154 C-A Hetero INTERGENIC
SBS Chr3 17676650 T-G Hetero INTERGENIC
SBS Chr3 33592232 C-T Homo INTERGENIC
SBS Chr4 9116303 T-A Hetero INTERGENIC
SBS Chr4 10763543 A-C Hetero INTERGENIC
SBS Chr4 13970927 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 16112667 T-C Hetero INTERGENIC
SBS Chr4 16632490 C-T Hetero INTERGENIC
SBS Chr4 22357963 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g130700
SBS Chr4 26091346 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g183400
SBS Chr4 27547971 C-T Homo INTERGENIC
SBS Chr5 1857346 G-A Hetero INTERGENIC
SBS Chr5 2198249 G-C Hetero INTERGENIC
SBS Chr5 24130515 C-T Homo INTERGENIC
SBS Chr5 26254968 C-G Hetero INTRON
SBS Chr6 10899753 T-C Homo INTRON
SBS Chr6 27621924 C-T Hetero INTERGENIC
SBS Chr8 16319226 G-T Hetero INTERGENIC
SBS Chr8 19379033 A-T Hetero INTERGENIC
SBS Chr9 598896 C-A Hetero INTERGENIC
SBS Chr9 4783705 A-G Homo INTERGENIC
SBS Chr9 6560446 C-T Hetero INTERGENIC
SBS Chr9 13202155 G-T Homo INTERGENIC
SBS Chr10 894947 C-T Hetero INTERGENIC
SBS Chr10 15994257 A-T Hetero INTERGENIC
SBS Chr11 9309238 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 11072967 T-C Homo INTERGENIC
SBS Chr11 11646785 G-A Hetero INTERGENIC
SBS Chr11 11684736 T-C Homo INTERGENIC
SBS Chr12 1880610 G-A Homo INTERGENIC
SBS Chr12 3205256 C-T Homo INTERGENIC
SBS Chr12 8569215 A-C Homo INTERGENIC
SBS Chr12 8601810 C-A Homo INTERGENIC
SBS Chr12 18401009 C-G Homo INTERGENIC
SBS Chr12 19662344 C-T Homo INTERGENIC
SBS Chr12 19854263 A-G Homo INTERGENIC
SBS Chr12 21319013 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 9840213 9840214 1
Deletion Chr8 10683908 10683912 4
Deletion Chr1 12313001 12333000 19999 OsKitaake01g149500
Deletion Chr1 12350001 12370000 19999 OsKitaake01g149800
Deletion Chr8 15495112 15495115 3
Deletion Chr2 17051479 17051500 21
Deletion Chr5 17349894 17349898 4
Deletion Chr1 21841235 21841238 3
Deletion Chr2 28458636 28458638 2 OsKitaake02g286400

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6054470 6054473 2
Insertion Chr1 16950919 16950922 2
Insertion Chr4 22205697 22205700 2
Insertion Chr6 5005486 5005490 3
Insertion Chr7 308402 308405 2
Insertion Chr12 10628403 10628407 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 7702488 7782083 OsKitaake06g099400
Inversion Chr6 7702896 7782087 OsKitaake06g099400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 3481262 Chr2 31159116 OsKitaake07g044200
Translocation Chr7 3481279 Chr2 31159908 2
Translocation Chr11 5916959 Chr2 26669003 2
Translocation Chr11 5917759 Chr1 21368329 OsKitaake11g072200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5522993	A-T	Homo	INTERGENIC
SBS	Chr1	11084049	C-T	Hetero	INTERGENIC
SBS	Chr1	11471613	A-C	Hetero	INTERGENIC
SBS	Chr1	19183105	G-A	Hetero	INTERGENIC
SBS	Chr1	30610039	G-A	Hetero	INTERGENIC
SBS	Chr2	364038	T-C	Hetero	INTERGENIC
SBS	Chr2	10170078	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g122200
SBS	Chr2	19742128	G-A	Hetero	INTERGENIC
SBS	Chr3	5108363	G-A	Hetero	INTERGENIC
SBS	Chr3	17632149	T-A	Hetero	INTERGENIC
SBS	Chr3	17632154	C-A	Hetero	INTERGENIC
SBS	Chr3	17676650	T-G	Hetero	INTERGENIC
SBS	Chr3	33592232	C-T	Homo	INTERGENIC
SBS	Chr4	9116303	T-A	Hetero	INTERGENIC
SBS	Chr4	10763543	A-C	Hetero	INTERGENIC
SBS	Chr4	13970927	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	16112667	T-C	Hetero	INTERGENIC
SBS	Chr4	16632490	C-T	Hetero	INTERGENIC
SBS	Chr4	22357963	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g130700
SBS	Chr4	26091346	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g183400
SBS	Chr4	27547971	C-T	Homo	INTERGENIC
SBS	Chr5	1857346	G-A	Hetero	INTERGENIC
SBS	Chr5	2198249	G-C	Hetero	INTERGENIC
SBS	Chr5	24130515	C-T	Homo	INTERGENIC
SBS	Chr5	26254968	C-G	Hetero	INTRON
SBS	Chr6	10899753	T-C	Homo	INTRON
SBS	Chr6	27621924	C-T	Hetero	INTERGENIC
SBS	Chr8	16319226	G-T	Hetero	INTERGENIC
SBS	Chr8	19379033	A-T	Hetero	INTERGENIC
SBS	Chr9	598896	C-A	Hetero	INTERGENIC
SBS	Chr9	4783705	A-G	Homo	INTERGENIC
SBS	Chr9	6560446	C-T	Hetero	INTERGENIC
SBS	Chr9	13202155	G-T	Homo	INTERGENIC
SBS	Chr10	894947	C-T	Hetero	INTERGENIC
SBS	Chr10	15994257	A-T	Hetero	INTERGENIC
SBS	Chr11	9309238	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	11072967	T-C	Homo	INTERGENIC
SBS	Chr11	11646785	G-A	Hetero	INTERGENIC
SBS	Chr11	11684736	T-C	Homo	INTERGENIC
SBS	Chr12	1880610	G-A	Homo	INTERGENIC
SBS	Chr12	3205256	C-T	Homo	INTERGENIC
SBS	Chr12	8569215	A-C	Homo	INTERGENIC
SBS	Chr12	8601810	C-A	Homo	INTERGENIC
SBS	Chr12	18401009	C-G	Homo	INTERGENIC
SBS	Chr12	19662344	C-T	Homo	INTERGENIC
SBS	Chr12	19854263	A-G	Homo	INTERGENIC
SBS	Chr12	21319013	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	9840213	9840214	1
Deletion	Chr8	10683908	10683912	4
Deletion	Chr1	12313001	12333000	19999	OsKitaake01g149500
Deletion	Chr1	12350001	12370000	19999	OsKitaake01g149800
Deletion	Chr8	15495112	15495115	3
Deletion	Chr2	17051479	17051500	21
Deletion	Chr5	17349894	17349898	4
Deletion	Chr1	21841235	21841238	3
Deletion	Chr2	28458636	28458638	2	OsKitaake02g286400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7702488	7782083	OsKitaake06g099400
Inversion	Chr6	7702896	7782087	OsKitaake06g099400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes