Search Kitaake

Mutant Information

Mutant Name	FN3536-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3536-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19889593 C-G Homo INTERGENIC
SBS Chr1 24270374 G-A Homo INTRON
SBS Chr1 32667008 A-G Hetero INTERGENIC
SBS Chr1 42191164 A-G Hetero INTERGENIC
SBS Chr1 43251955 C-T Hetero INTERGENIC
SBS Chr2 7691605 C-T Homo INTERGENIC
SBS Chr2 11647443 C-G Hetero INTERGENIC
SBS Chr2 14984384 T-A Hetero INTERGENIC
SBS Chr2 27410190 G-A Hetero INTERGENIC
SBS Chr3 17104005 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g212500
SBS Chr3 25676702 A-G Hetero INTERGENIC
SBS Chr4 479089 C-T Hetero INTRON
SBS Chr5 25231253 G-T Homo INTERGENIC
SBS Chr5 26723194 T-A Homo INTRON
SBS Chr6 1001890 A-G Homo INTERGENIC
SBS Chr6 20798203 T-C Hetero INTRON
SBS Chr7 609140 C-T Hetero INTRON
SBS Chr7 1600302 C-A Hetero INTRON
SBS Chr7 7818014 A-G Hetero INTERGENIC
SBS Chr7 10949002 A-T Hetero INTERGENIC
SBS Chr8 7638275 C-T Hetero INTERGENIC
SBS Chr8 9063773 T-A Hetero INTERGENIC
SBS Chr8 18349060 T-A Hetero INTERGENIC
SBS Chr9 8815100 G-C Hetero INTERGENIC
SBS Chr10 19460759 C-A Homo INTERGENIC
SBS Chr10 23926464 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g206700
SBS Chr11 2583900 G-T Hetero INTERGENIC
SBS Chr12 9601338 G-A Hetero INTERGENIC
SBS Chr12 16264305 A-G Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3398268 3398269 1
Deletion Chr7 3615393 3615399 6
Deletion Chr3 4499896 4499898 2
Deletion Chr2 6702747 6702750 3
Deletion Chr5 15501231 15501234 3
Deletion Chr1 22984616 22984618 2
Deletion Chr7 25474140 25474147 7
Deletion Chr4 34651001 34734000 82999 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 20958097 20958102 4
Insertion Chr6 13707497 13707501 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 34645978 34760489 OsKitaake04g289200
Inversion Chr4 34734772 34760492 OsKitaake04g290100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 22692521 Chr3 26054212
Translocation Chr6 22715512 Chr3 26051345 2
Translocation Chr7 27711569 Chr4 34647793
Translocation Chr7 27711576 Chr4 34645988 OsKitaake04g289200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19889593	C-G	Homo	INTERGENIC
SBS	Chr1	24270374	G-A	Homo	INTRON
SBS	Chr1	32667008	A-G	Hetero	INTERGENIC
SBS	Chr1	42191164	A-G	Hetero	INTERGENIC
SBS	Chr1	43251955	C-T	Hetero	INTERGENIC
SBS	Chr2	7691605	C-T	Homo	INTERGENIC
SBS	Chr2	11647443	C-G	Hetero	INTERGENIC
SBS	Chr2	14984384	T-A	Hetero	INTERGENIC
SBS	Chr2	27410190	G-A	Hetero	INTERGENIC
SBS	Chr3	17104005	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g212500
SBS	Chr3	25676702	A-G	Hetero	INTERGENIC
SBS	Chr4	479089	C-T	Hetero	INTRON
SBS	Chr5	25231253	G-T	Homo	INTERGENIC
SBS	Chr5	26723194	T-A	Homo	INTRON
SBS	Chr6	1001890	A-G	Homo	INTERGENIC
SBS	Chr6	20798203	T-C	Hetero	INTRON
SBS	Chr7	609140	C-T	Hetero	INTRON
SBS	Chr7	1600302	C-A	Hetero	INTRON
SBS	Chr7	7818014	A-G	Hetero	INTERGENIC
SBS	Chr7	10949002	A-T	Hetero	INTERGENIC
SBS	Chr8	7638275	C-T	Hetero	INTERGENIC
SBS	Chr8	9063773	T-A	Hetero	INTERGENIC
SBS	Chr8	18349060	T-A	Hetero	INTERGENIC
SBS	Chr9	8815100	G-C	Hetero	INTERGENIC
SBS	Chr10	19460759	C-A	Homo	INTERGENIC
SBS	Chr10	23926464	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g206700
SBS	Chr11	2583900	G-T	Hetero	INTERGENIC
SBS	Chr12	9601338	G-A	Hetero	INTERGENIC
SBS	Chr12	16264305	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3398268	3398269	1
Deletion	Chr7	3615393	3615399	6
Deletion	Chr3	4499896	4499898	2
Deletion	Chr2	6702747	6702750	3
Deletion	Chr5	15501231	15501234	3
Deletion	Chr1	22984616	22984618	2
Deletion	Chr7	25474140	25474147	7
Deletion	Chr4	34651001	34734000	82999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	34645978	34760489	OsKitaake04g289200
Inversion	Chr4	34734772	34760492	OsKitaake04g290100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes