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Mutant Information

Mutant Name	FN3537-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3537-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8167951 G-A Hetero INTERGENIC
SBS Chr2 1029165 C-T Hetero INTERGENIC
SBS Chr2 16773661 A-G Homo INTERGENIC
SBS Chr2 26037527 C-T Hetero INTERGENIC
SBS Chr2 36593625 C-A Homo INTERGENIC
SBS Chr3 4204794 C-T Hetero UTR_3_PRIME
SBS Chr3 11511808 C-T Homo INTERGENIC
SBS Chr3 17101104 C-G Hetero INTRON
SBS Chr3 17464112 A-G Homo INTERGENIC
SBS Chr3 26745578 T-C Hetero INTRON
SBS Chr3 30024319 G-A Hetero INTERGENIC
SBS Chr3 30902948 T-A Hetero SPLICE_SITE_REGION
SBS Chr3 35990192 A-T Homo INTRON
SBS Chr3 36143203 T-A Hetero INTRON
SBS Chr4 926274 C-A Hetero INTERGENIC
SBS Chr4 5749468 T-G Hetero INTERGENIC
SBS Chr4 6814555 T-C Homo INTERGENIC
SBS Chr4 33761815 C-T Hetero INTRON
SBS Chr4 36563149 T-A Homo INTERGENIC
SBS Chr5 6709953 A-G Homo NON_SYNONYMOUS_CODING OsKitaake05g067600
SBS Chr5 17432101 G-A Hetero INTERGENIC
SBS Chr5 29863679 T-A Homo NON_SYNONYMOUS_CODING OsKitaake05g286000
SBS Chr6 1369979 A-T Hetero INTERGENIC
SBS Chr6 26878278 C-T Hetero INTERGENIC
SBS Chr7 7642551 A-G Hetero INTERGENIC
SBS Chr8 1297380 C-A Hetero INTERGENIC
SBS Chr8 23036671 T-A Hetero INTERGENIC
SBS Chr8 27602132 T-G Hetero INTRON
SBS Chr8 27602138 A-T Hetero INTRON
SBS Chr9 6293287 G-A Hetero INTERGENIC
SBS Chr9 18889466 G-A Hetero INTERGENIC
SBS Chr10 1925519 C-T Hetero INTERGENIC
SBS Chr10 14459889 C-T Hetero INTERGENIC
SBS Chr10 16161591 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g108200
SBS Chr11 3253197 G-A Hetero INTERGENIC
SBS Chr11 9842811 G-A Hetero INTERGENIC
SBS Chr11 10480964 C-A Hetero INTERGENIC
SBS Chr12 10820195 A-G Hetero INTRON
SBS Chr12 17355547 G-C Homo INTERGENIC
SBS Chr12 24230312 C-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3688918 3688919 1
Deletion Chr7 6246599 6246602 3
Deletion Chr4 7039894 7039899 5
Deletion Chr4 7351520 7351522 2
Deletion Chr5 7856518 7856519 1
Deletion Chr4 11214752 11214753 1
Deletion Chr6 17091041 17091042 1
Deletion Chr6 17173130 17173131 1
Deletion Chr6 17783787 17783789 2
Deletion Chr5 17911200 17911202 2
Deletion Chr5 18164273 18164275 2
Deletion Chr6 18804570 18804576 6
Deletion Chr3 19024001 19049000 24999 4
Deletion Chr10 21357703 21357709 6
Deletion Chr1 21851352 21851354 2
Deletion Chr3 23632547 23632560 13
Deletion Chr4 25080915 25080950 35
Deletion Chr1 31410885 31410886 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7501446 7501449 2
Insertion Chr7 29596810 29596813 2
Insertion Chr12 23333501 23333506 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 19048709 19711407 OsKitaake03g228000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 18532653 Chr3 6562392

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8167951	G-A	Hetero	INTERGENIC
SBS	Chr2	1029165	C-T	Hetero	INTERGENIC
SBS	Chr2	16773661	A-G	Homo	INTERGENIC
SBS	Chr2	26037527	C-T	Hetero	INTERGENIC
SBS	Chr2	36593625	C-A	Homo	INTERGENIC
SBS	Chr3	4204794	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	11511808	C-T	Homo	INTERGENIC
SBS	Chr3	17101104	C-G	Hetero	INTRON
SBS	Chr3	17464112	A-G	Homo	INTERGENIC
SBS	Chr3	26745578	T-C	Hetero	INTRON
SBS	Chr3	30024319	G-A	Hetero	INTERGENIC
SBS	Chr3	30902948	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	35990192	A-T	Homo	INTRON
SBS	Chr3	36143203	T-A	Hetero	INTRON
SBS	Chr4	926274	C-A	Hetero	INTERGENIC
SBS	Chr4	5749468	T-G	Hetero	INTERGENIC
SBS	Chr4	6814555	T-C	Homo	INTERGENIC
SBS	Chr4	33761815	C-T	Hetero	INTRON
SBS	Chr4	36563149	T-A	Homo	INTERGENIC
SBS	Chr5	6709953	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g067600
SBS	Chr5	17432101	G-A	Hetero	INTERGENIC
SBS	Chr5	29863679	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g286000
SBS	Chr6	1369979	A-T	Hetero	INTERGENIC
SBS	Chr6	26878278	C-T	Hetero	INTERGENIC
SBS	Chr7	7642551	A-G	Hetero	INTERGENIC
SBS	Chr8	1297380	C-A	Hetero	INTERGENIC
SBS	Chr8	23036671	T-A	Hetero	INTERGENIC
SBS	Chr8	27602132	T-G	Hetero	INTRON
SBS	Chr8	27602138	A-T	Hetero	INTRON
SBS	Chr9	6293287	G-A	Hetero	INTERGENIC
SBS	Chr9	18889466	G-A	Hetero	INTERGENIC
SBS	Chr10	1925519	C-T	Hetero	INTERGENIC
SBS	Chr10	14459889	C-T	Hetero	INTERGENIC
SBS	Chr10	16161591	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g108200
SBS	Chr11	3253197	G-A	Hetero	INTERGENIC
SBS	Chr11	9842811	G-A	Hetero	INTERGENIC
SBS	Chr11	10480964	C-A	Hetero	INTERGENIC
SBS	Chr12	10820195	A-G	Hetero	INTRON
SBS	Chr12	17355547	G-C	Homo	INTERGENIC
SBS	Chr12	24230312	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3688918	3688919	1
Deletion	Chr7	6246599	6246602	3
Deletion	Chr4	7039894	7039899	5
Deletion	Chr4	7351520	7351522	2
Deletion	Chr5	7856518	7856519	1
Deletion	Chr4	11214752	11214753	1
Deletion	Chr6	17091041	17091042	1
Deletion	Chr6	17173130	17173131	1
Deletion	Chr6	17783787	17783789	2
Deletion	Chr5	17911200	17911202	2
Deletion	Chr5	18164273	18164275	2
Deletion	Chr6	18804570	18804576	6
Deletion	Chr3	19024001	19049000	24999	4
Deletion	Chr10	21357703	21357709	6
Deletion	Chr1	21851352	21851354	2
Deletion	Chr3	23632547	23632560	13
Deletion	Chr4	25080915	25080950	35
Deletion	Chr1	31410885	31410886	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	19048709	19711407	OsKitaake03g228000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes