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| Mutant Information |
|---|
| Mutant Name | FN3538-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3538-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18601578 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36534592 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38125538 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 44284972 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 11378833 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21028950 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 32894507 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35103707 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35103708 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35103709 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 36484729 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1453154 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4735747 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13734867 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 15642945 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15743895 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 26095963 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 9598884 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g088300 |
| SBS | Chr5 | 17862838 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 4150597 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14711648 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16206020 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16607860 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16698042 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 5953674 | C-T | Homo | INTRON | |
| SBS | Chr11 | 8165280 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 8165281 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 15621755 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g125600 |
| SBS | Chr11 | 15643416 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15680135 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15766914 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21355447 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23894374 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 24784614 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 3316129 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 17256383 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22267240 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 3469215 | 3469216 | 1 | |
| Deletion | Chr11 | 4038225 | 4038239 | 14 | |
| Deletion | Chr6 | 7890019 | 7890041 | 22 | |
| Deletion | Chr12 | 8327979 | 8327981 | 2 | |
| Deletion | Chr6 | 15213001 | 15318000 | 104999 | 5 |
| Deletion | Chr2 | 15798190 | 15798191 | 1 | |
| Deletion | Chr8 | 18482974 | 18482976 | 2 | |
| Deletion | Chr5 | 19433441 | 19433442 | 1 | |
| Deletion | Chr3 | 20337876 | 20337877 | 1 | |
| Deletion | Chr6 | 21271616 | 21271617 | 1 | OsKitaake06g188500 |
| Deletion | Chr10 | 22791973 | 22791974 | 1 | OsKitaake10g189300 |
| Deletion | Chr4 | 23972881 | 23972888 | 7 | |
| Deletion | Chr8 | 24118367 | 24118373 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 5510289 | 5510292 | 2 | |
| Insertion | Chr7 | 28283842 | 28283845 | 2 | |
| Insertion | Chr8 | 12905213 | 12905215 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 24947167 | 25041121 |