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| Mutant Information |
|---|
| Mutant Name | FN3539-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3539-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 17
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29507588 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 5794028 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20432534 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2376415 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15529073 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 28317925 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g211000 |
| SBS | Chr4 | 36476663 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g317300 |
| SBS | Chr4 | 36476664 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g317300 |
| SBS | Chr5 | 26922 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 10568801 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 12645235 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9532304 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3332849 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 5463595 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9906437 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 15093001 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16128443 | G-T | Hetero | INTERGENIC |
Deletions: 9
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 15986072 | 15986075 | 2 | |
| Insertion | Chr12 | 14489846 | 14489848 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 8038002 | 8215093 | OsKitaake12g084700 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 10669261 | Chr3 | 1091337 | OsKitaake03g016901 |
| Translocation | Chr5 | 10677263 | Chr3 | 1091327 | 2 |