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Mutant Information

Mutant Name	FN354-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN354-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9508142 G-T Hetero INTERGENIC
SBS Chr1 9508144 G-T Hetero INTERGENIC
SBS Chr1 9999404 G-A Hetero INTERGENIC
SBS Chr1 18348108 G-A Homo INTERGENIC
SBS Chr1 32069908 A-T Hetero INTERGENIC
SBS Chr1 34255576 C-T Hetero INTERGENIC
SBS Chr2 8673578 T-C Hetero INTERGENIC
SBS Chr2 14517763 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 18117759 A-C Hetero INTERGENIC
SBS Chr2 33229996 C-T Hetero INTERGENIC
SBS Chr3 802855 A-T Hetero INTERGENIC
SBS Chr3 5400885 C-A Hetero INTERGENIC
SBS Chr3 5400886 T-A Hetero INTERGENIC
SBS Chr3 6904541 T-A Hetero INTERGENIC
SBS Chr3 7699190 C-T Hetero INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 24351218 G-A Hetero INTERGENIC
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr3 29900455 G-T Hetero INTERGENIC
SBS Chr4 19489930 C-A Hetero INTERGENIC
SBS Chr4 30013019 C-T Hetero INTRON
SBS Chr5 23831487 T-C Hetero INTERGENIC
SBS Chr5 27278529 C-T Homo INTERGENIC
SBS Chr6 1030223 C-T Hetero INTERGENIC
SBS Chr6 25607820 G-A Hetero INTRON
SBS Chr7 8680841 T-C Hetero INTERGENIC
SBS Chr7 10587186 G-A Hetero INTERGENIC
SBS Chr7 14240399 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g122900
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 17733007 G-A Hetero INTERGENIC
SBS Chr8 27470262 C-T Homo INTERGENIC
SBS Chr9 22030799 A-T Hetero INTRON
SBS Chr11 3968233 G-T Homo INTERGENIC
SBS Chr11 11960885 G-A Homo INTERGENIC
SBS Chr11 15370244 T-A Hetero INTERGENIC
SBS Chr11 15484032 C-A Hetero INTERGENIC
SBS Chr11 16242447 C-T Hetero INTERGENIC
SBS Chr11 20170841 C-T Hetero INTERGENIC
SBS Chr11 23316573 G-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2411880 2411891 11
Deletion Chr2 6402001 6444000 41999 6
Deletion Chr12 9611428 9611429 1
Deletion Chr6 16647670 16647672 2
Deletion Chr6 17538873 17538880 7
Deletion Chr5 18748178 18748181 3
Deletion Chr2 19150795 19150796 1
Deletion Chr1 21044674 21044675 1
Deletion Chr2 22074356 22074360 4
Deletion Chr10 22179510 22179523 13

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4499896 4499899 2
Insertion Chr6 2252084 2252087 2
Insertion Chr8 11655385 11655388 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2091336 2308401 2
Inversion Chr1 2091347 2308410 2
Inversion Chr11 6925063 7480263 OsKitaake11g084366

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9508142	G-T	Hetero	INTERGENIC
SBS	Chr1	9508144	G-T	Hetero	INTERGENIC
SBS	Chr1	9999404	G-A	Hetero	INTERGENIC
SBS	Chr1	18348108	G-A	Homo	INTERGENIC
SBS	Chr1	32069908	A-T	Hetero	INTERGENIC
SBS	Chr1	34255576	C-T	Hetero	INTERGENIC
SBS	Chr2	8673578	T-C	Hetero	INTERGENIC
SBS	Chr2	14517763	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	18117759	A-C	Hetero	INTERGENIC
SBS	Chr2	33229996	C-T	Hetero	INTERGENIC
SBS	Chr3	802855	A-T	Hetero	INTERGENIC
SBS	Chr3	5400885	C-A	Hetero	INTERGENIC
SBS	Chr3	5400886	T-A	Hetero	INTERGENIC
SBS	Chr3	6904541	T-A	Hetero	INTERGENIC
SBS	Chr3	7699190	C-T	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	24351218	G-A	Hetero	INTERGENIC
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr3	29900455	G-T	Hetero	INTERGENIC
SBS	Chr4	19489930	C-A	Hetero	INTERGENIC
SBS	Chr4	30013019	C-T	Hetero	INTRON
SBS	Chr5	23831487	T-C	Hetero	INTERGENIC
SBS	Chr5	27278529	C-T	Homo	INTERGENIC
SBS	Chr6	1030223	C-T	Hetero	INTERGENIC
SBS	Chr6	25607820	G-A	Hetero	INTRON
SBS	Chr7	8680841	T-C	Hetero	INTERGENIC
SBS	Chr7	10587186	G-A	Hetero	INTERGENIC
SBS	Chr7	14240399	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g122900
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	17733007	G-A	Hetero	INTERGENIC
SBS	Chr8	27470262	C-T	Homo	INTERGENIC
SBS	Chr9	22030799	A-T	Hetero	INTRON
SBS	Chr11	3968233	G-T	Homo	INTERGENIC
SBS	Chr11	11960885	G-A	Homo	INTERGENIC
SBS	Chr11	15370244	T-A	Hetero	INTERGENIC
SBS	Chr11	15484032	C-A	Hetero	INTERGENIC
SBS	Chr11	16242447	C-T	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Hetero	INTERGENIC
SBS	Chr11	23316573	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2411880	2411891	11
Deletion	Chr2	6402001	6444000	41999	6
Deletion	Chr12	9611428	9611429	1
Deletion	Chr6	16647670	16647672	2
Deletion	Chr6	17538873	17538880	7
Deletion	Chr5	18748178	18748181	3
Deletion	Chr2	19150795	19150796	1
Deletion	Chr1	21044674	21044675	1
Deletion	Chr2	22074356	22074360	4
Deletion	Chr10	22179510	22179523	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2091336	2308401	2
Inversion	Chr1	2091347	2308410	2
Inversion	Chr11	6925063	7480263	OsKitaake11g084366

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes