Search Kitaake

Mutant Information

Mutant Name	FN3540-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3540-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 328189 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 14927781 T-C Homo INTERGENIC
SBS Chr1 18258961 T-C Homo INTERGENIC
SBS Chr1 20785060 G-C Homo INTERGENIC
SBS Chr2 15014010 C-T Homo INTERGENIC
SBS Chr2 25829541 T-G Hetero INTERGENIC
SBS Chr3 6171628 T-A Hetero UTR_3_PRIME
SBS Chr3 14100102 C-T Hetero INTERGENIC
SBS Chr3 19369617 G-A Hetero INTERGENIC
SBS Chr3 23954167 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g256700
SBS Chr3 33252201 G-T Hetero INTERGENIC
SBS Chr5 8494668 C-T Homo INTERGENIC
SBS Chr5 25925303 C-T Homo INTERGENIC
SBS Chr5 28776652 T-A Hetero INTERGENIC
SBS Chr6 3811046 T-A Hetero INTERGENIC
SBS Chr6 3811047 G-A Hetero INTERGENIC
SBS Chr6 15281367 C-T Homo INTERGENIC
SBS Chr6 17710743 T-A Homo INTERGENIC
SBS Chr6 28505014 T-C Hetero UTR_5_PRIME
SBS Chr7 1803203 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g025200
SBS Chr7 27213846 G-A Hetero INTERGENIC
SBS Chr8 6483369 C-T Hetero INTERGENIC
SBS Chr8 20127920 G-T Homo INTERGENIC
SBS Chr8 20127921 C-T Homo INTERGENIC
SBS Chr10 3288879 C-T Hetero INTERGENIC
SBS Chr11 13063059 T-C Hetero INTERGENIC
SBS Chr11 20484561 G-A Homo INTERGENIC
SBS Chr12 10392576 T-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 91981 91984 3
Deletion Chr12 718529 718538 9
Deletion Chr11 4989495 4989501 6
Deletion Chr11 6602180 6602188 8
Deletion Chr9 13326812 13326819 7
Deletion Chr7 13887444 13887446 2
Deletion Chr6 14295348 14295355 7
Deletion Chr2 15010217 15010227 10
Deletion Chr11 16377922 16377938 16
Deletion Chr3 25640567 25640571 4
Deletion Chr3 26524296 26524303 7
Deletion Chr3 28982001 29031000 48999 3
Deletion Chr2 30835142 30835143 1
Deletion Chr1 36757131 36757144 13

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 23399614 23399617 2
Insertion Chr11 2692593 2692595 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	328189	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	14927781	T-C	Homo	INTERGENIC
SBS	Chr1	18258961	T-C	Homo	INTERGENIC
SBS	Chr1	20785060	G-C	Homo	INTERGENIC
SBS	Chr2	15014010	C-T	Homo	INTERGENIC
SBS	Chr2	25829541	T-G	Hetero	INTERGENIC
SBS	Chr3	6171628	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	14100102	C-T	Hetero	INTERGENIC
SBS	Chr3	19369617	G-A	Hetero	INTERGENIC
SBS	Chr3	23954167	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g256700
SBS	Chr3	33252201	G-T	Hetero	INTERGENIC
SBS	Chr5	8494668	C-T	Homo	INTERGENIC
SBS	Chr5	25925303	C-T	Homo	INTERGENIC
SBS	Chr5	28776652	T-A	Hetero	INTERGENIC
SBS	Chr6	3811046	T-A	Hetero	INTERGENIC
SBS	Chr6	3811047	G-A	Hetero	INTERGENIC
SBS	Chr6	15281367	C-T	Homo	INTERGENIC
SBS	Chr6	17710743	T-A	Homo	INTERGENIC
SBS	Chr6	28505014	T-C	Hetero	UTR_5_PRIME
SBS	Chr7	1803203	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g025200
SBS	Chr7	27213846	G-A	Hetero	INTERGENIC
SBS	Chr8	6483369	C-T	Hetero	INTERGENIC
SBS	Chr8	20127920	G-T	Homo	INTERGENIC
SBS	Chr8	20127921	C-T	Homo	INTERGENIC
SBS	Chr10	3288879	C-T	Hetero	INTERGENIC
SBS	Chr11	13063059	T-C	Hetero	INTERGENIC
SBS	Chr11	20484561	G-A	Homo	INTERGENIC
SBS	Chr12	10392576	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	91981	91984	3
Deletion	Chr12	718529	718538	9
Deletion	Chr11	4989495	4989501	6
Deletion	Chr11	6602180	6602188	8
Deletion	Chr9	13326812	13326819	7
Deletion	Chr7	13887444	13887446	2
Deletion	Chr6	14295348	14295355	7
Deletion	Chr2	15010217	15010227	10
Deletion	Chr11	16377922	16377938	16
Deletion	Chr3	25640567	25640571	4
Deletion	Chr3	26524296	26524303	7
Deletion	Chr3	28982001	29031000	48999	3
Deletion	Chr2	30835142	30835143	1
Deletion	Chr1	36757131	36757144	13

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes