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Mutant Information

Mutant Name	FN3542-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3542-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2379413 T-A Hetero INTERGENIC
SBS Chr1 2591390 A-G Hetero UTR_3_PRIME
SBS Chr1 10123913 A-T Hetero INTRON
SBS Chr2 6440850 C-A Homo INTERGENIC
SBS Chr2 6440851 C-A Homo INTERGENIC
SBS Chr2 6510661 A-T Homo INTERGENIC
SBS Chr2 6510662 C-T Homo INTERGENIC
SBS Chr2 36325666 A-C Homo INTERGENIC
SBS Chr2 36378414 T-C Homo INTERGENIC
SBS Chr3 22862430 G-A Hetero INTRON
SBS Chr3 23673827 T-C Hetero INTERGENIC
SBS Chr4 6349187 T-A Homo INTERGENIC
SBS Chr4 12011006 C-T Hetero INTERGENIC
SBS Chr4 26477769 C-T Hetero INTERGENIC
SBS Chr5 3313847 T-C Hetero INTERGENIC
SBS Chr5 4860272 C-T Hetero INTERGENIC
SBS Chr5 7886592 A-G Hetero UTR_5_PRIME
SBS Chr6 6028308 G-A Homo INTRON
SBS Chr6 9390962 T-C Homo INTERGENIC
SBS Chr6 23025829 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g203300
SBS Chr8 2792813 T-A Hetero INTERGENIC
SBS Chr8 7482829 C-A Hetero INTERGENIC
SBS Chr8 19256789 T-C Homo INTERGENIC
SBS Chr8 20957288 G-A Hetero INTERGENIC
SBS Chr9 7459121 G-T Hetero INTERGENIC
SBS Chr9 10365579 C-T Hetero INTERGENIC
SBS Chr11 13457416 C-T Hetero INTERGENIC
SBS Chr12 13866445 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2633669 2633678 9
Deletion Chr10 4460001 4536000 75999 5
Deletion Chr1 6500774 6500775 1
Deletion Chr4 7965001 8181000 215999 11
Deletion Chr1 11483001 11523000 39999 2
Deletion Chr10 15937874 15937875 1
Deletion Chr4 21390659 21390660 1
Deletion Chr11 24366280 24366283 3
Deletion Chr6 24491228 24491242 14
Deletion Chr4 31868213 31868217 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 21052760 21052764 3
Insertion Chr10 4492991 4492995 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11484162 11915390 OsKitaake01g139900
Inversion Chr1 11519145 11915393 OsKitaake01g140000
Inversion Chr3 16513066 16872828 OsKitaake03g209300
Inversion Chr3 16513070 16872827 OsKitaake03g209300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2379413	T-A	Hetero	INTERGENIC
SBS	Chr1	2591390	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	10123913	A-T	Hetero	INTRON
SBS	Chr2	6440850	C-A	Homo	INTERGENIC
SBS	Chr2	6440851	C-A	Homo	INTERGENIC
SBS	Chr2	6510661	A-T	Homo	INTERGENIC
SBS	Chr2	6510662	C-T	Homo	INTERGENIC
SBS	Chr2	36325666	A-C	Homo	INTERGENIC
SBS	Chr2	36378414	T-C	Homo	INTERGENIC
SBS	Chr3	22862430	G-A	Hetero	INTRON
SBS	Chr3	23673827	T-C	Hetero	INTERGENIC
SBS	Chr4	6349187	T-A	Homo	INTERGENIC
SBS	Chr4	12011006	C-T	Hetero	INTERGENIC
SBS	Chr4	26477769	C-T	Hetero	INTERGENIC
SBS	Chr5	3313847	T-C	Hetero	INTERGENIC
SBS	Chr5	4860272	C-T	Hetero	INTERGENIC
SBS	Chr5	7886592	A-G	Hetero	UTR_5_PRIME
SBS	Chr6	6028308	G-A	Homo	INTRON
SBS	Chr6	9390962	T-C	Homo	INTERGENIC
SBS	Chr6	23025829	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g203300
SBS	Chr8	2792813	T-A	Hetero	INTERGENIC
SBS	Chr8	7482829	C-A	Hetero	INTERGENIC
SBS	Chr8	19256789	T-C	Homo	INTERGENIC
SBS	Chr8	20957288	G-A	Hetero	INTERGENIC
SBS	Chr9	7459121	G-T	Hetero	INTERGENIC
SBS	Chr9	10365579	C-T	Hetero	INTERGENIC
SBS	Chr11	13457416	C-T	Hetero	INTERGENIC
SBS	Chr12	13866445	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2633669	2633678	9
Deletion	Chr10	4460001	4536000	75999	5
Deletion	Chr1	6500774	6500775	1
Deletion	Chr4	7965001	8181000	215999	11
Deletion	Chr1	11483001	11523000	39999	2
Deletion	Chr10	15937874	15937875	1
Deletion	Chr4	21390659	21390660	1
Deletion	Chr11	24366280	24366283	3
Deletion	Chr6	24491228	24491242	14
Deletion	Chr4	31868213	31868217	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11484162	11915390	OsKitaake01g139900
Inversion	Chr1	11519145	11915393	OsKitaake01g140000
Inversion	Chr3	16513066	16872828	OsKitaake03g209300
Inversion	Chr3	16513070	16872827	OsKitaake03g209300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes