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Mutant Information

Mutant Name	FN3543-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3543-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9327076 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g119800
SBS Chr1 16299790 C-T Hetero INTERGENIC
SBS Chr1 17041360 T-C Hetero INTRON
SBS Chr1 18108511 G-T Hetero START_GAINED
SBS Chr1 29691539 A-T Hetero INTRON
SBS Chr2 978639 G-A Hetero INTERGENIC
SBS Chr2 35812095 C-T Hetero INTERGENIC
SBS Chr3 25143705 A-T Hetero STOP_GAINED OsKitaake03g266300
SBS Chr3 27025659 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g278500
SBS Chr5 2202257 G-A Hetero INTERGENIC
SBS Chr5 2237085 A-G Homo INTERGENIC
SBS Chr5 9770754 C-T Hetero INTERGENIC
SBS Chr5 27494993 C-T Hetero INTERGENIC
SBS Chr6 4243746 C-G Hetero INTERGENIC
SBS Chr6 15790787 G-A Hetero INTERGENIC
SBS Chr7 23192910 G-A Homo INTRON
SBS Chr7 28360007 C-A Hetero INTERGENIC
SBS Chr8 16155948 T-C Homo INTERGENIC
SBS Chr8 21662169 G-C Homo INTERGENIC
SBS Chr9 10974112 G-C Hetero INTERGENIC
SBS Chr9 14039620 C-T Homo INTERGENIC
SBS Chr9 15371715 A-T Hetero INTERGENIC
SBS Chr10 5653670 G-A Hetero INTERGENIC
SBS Chr10 6787080 G-A Hetero INTERGENIC
SBS Chr10 12365590 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g074300
SBS Chr10 14633667 T-C Hetero INTERGENIC
SBS Chr11 7729174 G-T Hetero INTERGENIC
SBS Chr11 14435802 T-A Hetero INTERGENIC
SBS Chr12 5011728 T-C Hetero INTERGENIC
SBS Chr12 7261821 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 14741660 G-A Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1512592 1512594 2
Deletion Chr3 14866456 14866477 21
Deletion Chr6 28727534 28727535 1
Deletion Chr4 34793386 34793387 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37689548 37689551 2
Insertion Chr1 41466522 41466525 2
Insertion Chr6 12871056 12871059 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9327076	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g119800
SBS	Chr1	16299790	C-T	Hetero	INTERGENIC
SBS	Chr1	17041360	T-C	Hetero	INTRON
SBS	Chr1	18108511	G-T	Hetero	START_GAINED
SBS	Chr1	29691539	A-T	Hetero	INTRON
SBS	Chr2	978639	G-A	Hetero	INTERGENIC
SBS	Chr2	35812095	C-T	Hetero	INTERGENIC
SBS	Chr3	25143705	A-T	Hetero	STOP_GAINED	OsKitaake03g266300
SBS	Chr3	27025659	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g278500
SBS	Chr5	2202257	G-A	Hetero	INTERGENIC
SBS	Chr5	2237085	A-G	Homo	INTERGENIC
SBS	Chr5	9770754	C-T	Hetero	INTERGENIC
SBS	Chr5	27494993	C-T	Hetero	INTERGENIC
SBS	Chr6	4243746	C-G	Hetero	INTERGENIC
SBS	Chr6	15790787	G-A	Hetero	INTERGENIC
SBS	Chr7	23192910	G-A	Homo	INTRON
SBS	Chr7	28360007	C-A	Hetero	INTERGENIC
SBS	Chr8	16155948	T-C	Homo	INTERGENIC
SBS	Chr8	21662169	G-C	Homo	INTERGENIC
SBS	Chr9	10974112	G-C	Hetero	INTERGENIC
SBS	Chr9	14039620	C-T	Homo	INTERGENIC
SBS	Chr9	15371715	A-T	Hetero	INTERGENIC
SBS	Chr10	5653670	G-A	Hetero	INTERGENIC
SBS	Chr10	6787080	G-A	Hetero	INTERGENIC
SBS	Chr10	12365590	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g074300
SBS	Chr10	14633667	T-C	Hetero	INTERGENIC
SBS	Chr11	7729174	G-T	Hetero	INTERGENIC
SBS	Chr11	14435802	T-A	Hetero	INTERGENIC
SBS	Chr12	5011728	T-C	Hetero	INTERGENIC
SBS	Chr12	7261821	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	14741660	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1512592	1512594	2
Deletion	Chr3	14866456	14866477	21
Deletion	Chr6	28727534	28727535	1
Deletion	Chr4	34793386	34793387	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes