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Mutant Information

Mutant Name	FN3545-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3545-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 35996469 A-G Hetero INTERGENIC
SBS Chr2 11243606 T-G Homo INTRON
SBS Chr2 27839461 T-C Homo INTRON
SBS Chr2 29106492 T-A Hetero INTERGENIC
SBS Chr2 35208538 C-T Homo INTERGENIC
SBS Chr3 34556523 T-C Hetero INTERGENIC
SBS Chr4 3170196 G-A Hetero INTRON
SBS Chr4 14320189 G-A Hetero INTERGENIC
SBS Chr4 21696217 G-A Hetero INTERGENIC
SBS Chr4 30349393 G-T Hetero INTERGENIC
SBS Chr5 17942344 A-T Hetero INTERGENIC
SBS Chr5 18692078 G-T Hetero INTERGENIC
SBS Chr6 6394829 G-A Hetero INTERGENIC
SBS Chr6 9383730 A-T Hetero INTERGENIC
SBS Chr6 9383731 C-T Hetero INTERGENIC
SBS Chr6 27302551 G-A Homo SYNONYMOUS_CODING
SBS Chr6 30859654 C-T Homo INTERGENIC
SBS Chr7 4379373 T-A Hetero INTERGENIC
SBS Chr7 20567985 C-T Hetero INTERGENIC
SBS Chr8 972255 T-A Hetero INTERGENIC
SBS Chr8 8446202 C-T Hetero INTERGENIC
SBS Chr8 11309985 G-A Hetero INTERGENIC
SBS Chr9 13148570 A-G Homo INTERGENIC
SBS Chr10 1867187 A-G Hetero INTRON
SBS Chr10 8135560 G-C Hetero INTERGENIC
SBS Chr10 19799202 C-T Hetero INTERGENIC
SBS Chr11 4218677 G-A Homo INTERGENIC
SBS Chr11 24454446 G-A Hetero INTERGENIC
SBS Chr12 4552013 C-T Hetero INTERGENIC
SBS Chr12 20961644 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g163800

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1633182 1633274 92
Deletion Chr8 3586993 3586995 2
Deletion Chr10 3709379 3709385 6
Deletion Chr11 7060697 7060699 2
Deletion Chr2 8184555 8184557 2
Deletion Chr1 10809370 10809372 2
Deletion Chr6 17695033 17695034 1
Deletion Chr3 18957846 18957855 9
Deletion Chr2 22266396 22266397 1
Deletion Chr8 23169854 23169862 8
Deletion Chr5 24822376 24822384 8
Deletion Chr7 28346703 28346705 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 1454778 1454781 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 21610449 21628125 OsKitaake07g180900

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2618057 Chr3 32638720
Translocation Chr9 2618061 Chr3 32643979
Translocation Chr12 7354667 Chr9 18028886
Translocation Chr12 7354681 Chr9 18027748 OsKitaake09g138100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35996469	A-G	Hetero	INTERGENIC
SBS	Chr2	11243606	T-G	Homo	INTRON
SBS	Chr2	27839461	T-C	Homo	INTRON
SBS	Chr2	29106492	T-A	Hetero	INTERGENIC
SBS	Chr2	35208538	C-T	Homo	INTERGENIC
SBS	Chr3	34556523	T-C	Hetero	INTERGENIC
SBS	Chr4	3170196	G-A	Hetero	INTRON
SBS	Chr4	14320189	G-A	Hetero	INTERGENIC
SBS	Chr4	21696217	G-A	Hetero	INTERGENIC
SBS	Chr4	30349393	G-T	Hetero	INTERGENIC
SBS	Chr5	17942344	A-T	Hetero	INTERGENIC
SBS	Chr5	18692078	G-T	Hetero	INTERGENIC
SBS	Chr6	6394829	G-A	Hetero	INTERGENIC
SBS	Chr6	9383730	A-T	Hetero	INTERGENIC
SBS	Chr6	9383731	C-T	Hetero	INTERGENIC
SBS	Chr6	27302551	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	30859654	C-T	Homo	INTERGENIC
SBS	Chr7	4379373	T-A	Hetero	INTERGENIC
SBS	Chr7	20567985	C-T	Hetero	INTERGENIC
SBS	Chr8	972255	T-A	Hetero	INTERGENIC
SBS	Chr8	8446202	C-T	Hetero	INTERGENIC
SBS	Chr8	11309985	G-A	Hetero	INTERGENIC
SBS	Chr9	13148570	A-G	Homo	INTERGENIC
SBS	Chr10	1867187	A-G	Hetero	INTRON
SBS	Chr10	8135560	G-C	Hetero	INTERGENIC
SBS	Chr10	19799202	C-T	Hetero	INTERGENIC
SBS	Chr11	4218677	G-A	Homo	INTERGENIC
SBS	Chr11	24454446	G-A	Hetero	INTERGENIC
SBS	Chr12	4552013	C-T	Hetero	INTERGENIC
SBS	Chr12	20961644	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g163800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1633182	1633274	92
Deletion	Chr8	3586993	3586995	2
Deletion	Chr10	3709379	3709385	6
Deletion	Chr11	7060697	7060699	2
Deletion	Chr2	8184555	8184557	2
Deletion	Chr1	10809370	10809372	2
Deletion	Chr6	17695033	17695034	1
Deletion	Chr3	18957846	18957855	9
Deletion	Chr2	22266396	22266397	1
Deletion	Chr8	23169854	23169862	8
Deletion	Chr5	24822376	24822384	8
Deletion	Chr7	28346703	28346705	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	21610449	21628125	OsKitaake07g180900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes