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| Mutant Information |
|---|
| Mutant Name | FN3546-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3546-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15851587 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17621209 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32455769 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3801817 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g055100 |
| SBS | Chr2 | 35440751 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 17627339 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 21031173 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 37482499 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 37696501 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 35355502 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g299100 |
| SBS | Chr6 | 4461202 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15947529 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 19879139 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 20417726 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23536510 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 4751367 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 1696163 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14843416 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 19781824 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 13615705 | C-A | Homo | INTRON | |
| SBS | Chr12 | 9803569 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20813833 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 24657657 | G-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 4865313 | 4865319 | 6 | |
| Deletion | Chr2 | 8041001 | 8131000 | 89999 | 9 |
| Deletion | Chr12 | 8499956 | 8499959 | 3 | OsKitaake12g087500 |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr2 | 10302159 | 10302160 | 1 | |
| Deletion | Chr9 | 15638610 | 15638612 | 2 | |
| Deletion | Chr9 | 16464033 | 16464049 | 16 | |
| Deletion | Chr2 | 17514195 | 17514200 | 5 | |
| Deletion | Chr2 | 32227297 | 32227300 | 3 | |
| Deletion | Chr3 | 37525707 | 37525709 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 24507995 | 24507998 | 2 | |
| Insertion | Chr4 | 21760321 | 21760329 | 7 | |
| Insertion | Chr12 | 12358749 | 12358752 | 2 |