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| Mutant Information |
|---|
| Mutant Name | FN3547-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3547-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1790803 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 10067314 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 21205272 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 35466835 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 43138877 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g476200 |
| SBS | Chr2 | 12997747 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16751486 | A-T | Homo | INTRON | |
| SBS | Chr3 | 16986335 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 22110621 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 22158403 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 30922078 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35567168 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13603634 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g065600 |
| SBS | Chr4 | 22600038 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 23923173 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1387801 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g017200 |
| SBS | Chr5 | 16161332 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16649111 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26277540 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29934829 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8763249 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10954725 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9200340 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12420590 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 25306889 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5400829 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 9546611 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9988878 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7546613 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10692939 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13292120 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 18014367 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 7115088 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 12290773 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 18406722 | G-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2308569 | 2308572 | 3 | |
| Deletion | Chr6 | 5333001 | 5417000 | 83999 | 9 |
| Deletion | Chr11 | 6273191 | 6273196 | 5 | |
| Deletion | Chr12 | 6818000 | 6818001 | 1 | OsKitaake12g077300 |
| Deletion | Chr1 | 7248745 | 7248751 | 6 | |
| Deletion | Chr10 | 13264002 | 13264003 | 1 | |
| Deletion | Chr1 | 14907151 | 14907153 | 2 | |
| Deletion | Chr2 | 19531931 | 19531933 | 2 | |
| Deletion | Chr8 | 25383001 | 25440000 | 56999 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 3227309 | 3227312 | 2 | |
| Insertion | Chr4 | 21760387 | 21760390 | 2 | |
| Insertion | Chr6 | 20663970 | 20663973 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 153856 | 810657 | 2 |
| Inversion | Chr3 | 153862 | 810659 | 2 |
| Inversion | Chr2 | 10312290 | 10694125 | |
| Inversion | Chr8 | 21452370 | 21559374 | OsKitaake08g162600 |
| Inversion | Chr8 | 21452382 | 21559377 | OsKitaake08g162600 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 18052339 | Chr9 | 11298939 | 2 |