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Mutant Information

Mutant Name	FN3548-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3548-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1010315 C-T Homo INTERGENIC
SBS Chr1 9432080 C-T Hetero INTERGENIC
SBS Chr1 9538397 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g122100
SBS Chr1 39480854 C-T Homo INTRON
SBS Chr2 25832525 A-T Hetero INTERGENIC
SBS Chr2 27174098 T-G Hetero INTERGENIC
SBS Chr2 32541102 G-A Hetero INTERGENIC
SBS Chr3 13729345 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g181700
SBS Chr3 36827120 C-T Hetero INTERGENIC
SBS Chr4 4332991 A-C Hetero INTERGENIC
SBS Chr4 4332995 C-G Hetero INTERGENIC
SBS Chr4 4456932 C-G Homo INTERGENIC
SBS Chr4 6526775 T-A Homo INTERGENIC
SBS Chr4 13475139 G-T Homo INTERGENIC
SBS Chr4 33004315 G-T Homo INTRON
SBS Chr4 35815716 A-T Hetero INTRON
SBS Chr5 798907 T-C Hetero UTR_3_PRIME
SBS Chr5 15471138 C-T Hetero INTERGENIC
SBS Chr5 18899691 G-A Homo INTERGENIC
SBS Chr6 2901547 T-A Hetero INTERGENIC
SBS Chr6 17401860 C-T Hetero INTERGENIC
SBS Chr7 2519076 T-C Homo INTERGENIC
SBS Chr7 8784045 G-A Hetero INTERGENIC
SBS Chr7 16548131 G-A Hetero INTERGENIC
SBS Chr8 9869006 G-A Hetero INTRON
SBS Chr8 11998404 T-A Hetero INTRON
SBS Chr8 13963653 T-A Hetero INTRON
SBS Chr8 26615771 A-G Hetero INTERGENIC
SBS Chr9 1240277 A-T Hetero INTRON
SBS Chr9 10447092 C-T Homo INTRON
SBS Chr10 207299 G-A Hetero INTERGENIC
SBS Chr10 8284649 T-A Hetero INTERGENIC
SBS Chr11 1827526 A-T Hetero INTRON
SBS Chr11 11167776 C-T Hetero INTERGENIC
SBS Chr11 12094363 G-A Hetero INTERGENIC
SBS Chr11 19662308 G-A Hetero INTERGENIC
SBS Chr11 20875969 A-T Hetero INTERGENIC
SBS Chr11 29328998 T-C Hetero INTERGENIC
SBS Chr12 13439831 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g111400

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 6117682 6117683 1
Deletion Chr3 8866838 8866846 8
Deletion Chr3 9010792 9010804 12
Deletion Chr12 9155001 9175000 19999
Deletion Chr2 14424145 14424161 16
Deletion Chr1 14508743 14508763 20
Deletion Chr9 15653005 15653009 4
Deletion Chr4 28801001 28837000 35999 5
Deletion Chr11 29613001 29739000 125999 15

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3465078 3465081 2
Insertion Chr4 7480961 7480963 1
Insertion Chr5 5453031 5453034 2
Insertion Chr5 14213718 14213723 4
Insertion Chr7 4036415 4036418 2
Insertion Chr7 25703853 25703858 4
Insertion Chr8 14929054 14929058 3
Insertion Chr12 5837981 5837984 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 29613142 Chr1 11772029 OsKitaake11g244300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1010315	C-T	Homo	INTERGENIC
SBS	Chr1	9432080	C-T	Hetero	INTERGENIC
SBS	Chr1	9538397	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g122100
SBS	Chr1	39480854	C-T	Homo	INTRON
SBS	Chr2	25832525	A-T	Hetero	INTERGENIC
SBS	Chr2	27174098	T-G	Hetero	INTERGENIC
SBS	Chr2	32541102	G-A	Hetero	INTERGENIC
SBS	Chr3	13729345	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g181700
SBS	Chr3	36827120	C-T	Hetero	INTERGENIC
SBS	Chr4	4332991	A-C	Hetero	INTERGENIC
SBS	Chr4	4332995	C-G	Hetero	INTERGENIC
SBS	Chr4	4456932	C-G	Homo	INTERGENIC
SBS	Chr4	6526775	T-A	Homo	INTERGENIC
SBS	Chr4	13475139	G-T	Homo	INTERGENIC
SBS	Chr4	33004315	G-T	Homo	INTRON
SBS	Chr4	35815716	A-T	Hetero	INTRON
SBS	Chr5	798907	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	15471138	C-T	Hetero	INTERGENIC
SBS	Chr5	18899691	G-A	Homo	INTERGENIC
SBS	Chr6	2901547	T-A	Hetero	INTERGENIC
SBS	Chr6	17401860	C-T	Hetero	INTERGENIC
SBS	Chr7	2519076	T-C	Homo	INTERGENIC
SBS	Chr7	8784045	G-A	Hetero	INTERGENIC
SBS	Chr7	16548131	G-A	Hetero	INTERGENIC
SBS	Chr8	9869006	G-A	Hetero	INTRON
SBS	Chr8	11998404	T-A	Hetero	INTRON
SBS	Chr8	13963653	T-A	Hetero	INTRON
SBS	Chr8	26615771	A-G	Hetero	INTERGENIC
SBS	Chr9	1240277	A-T	Hetero	INTRON
SBS	Chr9	10447092	C-T	Homo	INTRON
SBS	Chr10	207299	G-A	Hetero	INTERGENIC
SBS	Chr10	8284649	T-A	Hetero	INTERGENIC
SBS	Chr11	1827526	A-T	Hetero	INTRON
SBS	Chr11	11167776	C-T	Hetero	INTERGENIC
SBS	Chr11	12094363	G-A	Hetero	INTERGENIC
SBS	Chr11	19662308	G-A	Hetero	INTERGENIC
SBS	Chr11	20875969	A-T	Hetero	INTERGENIC
SBS	Chr11	29328998	T-C	Hetero	INTERGENIC
SBS	Chr12	13439831	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g111400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	6117682	6117683	1
Deletion	Chr3	8866838	8866846	8
Deletion	Chr3	9010792	9010804	12
Deletion	Chr12	9155001	9175000	19999
Deletion	Chr2	14424145	14424161	16
Deletion	Chr1	14508743	14508763	20
Deletion	Chr9	15653005	15653009	4
Deletion	Chr4	28801001	28837000	35999	5
Deletion	Chr11	29613001	29739000	125999	15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	29613142	Chr1	11772029	OsKitaake11g244300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes