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| Mutant Information |
|---|
| Mutant Name | FN3549-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3549-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1121843 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 16976000 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34634445 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 12727680 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23043293 | G-T | Homo | INTRON | |
| SBS | Chr2 | 27823798 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27825502 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 4933777 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5891087 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9385086 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14018452 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 12402667 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12907938 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34061905 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11002480 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13468630 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 23386423 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 26345589 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g232800 |
| SBS | Chr5 | 26345590 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g232800 |
| SBS | Chr5 | 26481329 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 28592151 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g267500 |
| SBS | Chr6 | 1210428 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19074577 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g172400 |
| SBS | Chr6 | 19074578 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g172400 |
| SBS | Chr6 | 25868761 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 10267521 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12414639 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12414642 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2900919 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 21366088 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2490908 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9495699 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 22821151 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 23236065 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g196000 |
| SBS | Chr12 | 911458 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8774778 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8774779 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 8826126 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 16116681 | T-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 6410001 | 6485000 | 74999 | 7 |
| Deletion | Chr2 | 10417263 | 10417265 | 2 | |
| Deletion | Chr6 | 10575348 | 10575371 | 23 | |
| Deletion | Chr5 | 12515534 | 12515689 | 155 | |
| Deletion | Chr10 | 18196844 | 18196866 | 22 | |
| Deletion | Chr3 | 18401444 | 18401448 | 4 | |
| Deletion | Chr9 | 19056949 | 19056950 | 1 | |
| Deletion | Chr6 | 19074589 | 19074590 | 1 | OsKitaake06g172400 |
| Deletion | Chr6 | 19242242 | 19242246 | 4 | |
| Deletion | Chr4 | 20651275 | 20651277 | 2 | |
| Deletion | Chr11 | 29612001 | 29739000 | 126999 | 15 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 28024199 | 28024202 | 2 | |
| Insertion | Chr2 | 30616456 | 30616459 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 23319595 | Chr2 | 32514789 | |
| Translocation | Chr12 | 26952589 | Chr11 | 29611827 | 2 |