Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN355-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN355-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13965590 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 29311790 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 33025594 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 33025596 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 33025601 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34166135 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 38635098 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 4933412 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 22208720 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 27395574 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30603684 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 27149305 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 29462803 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 34429636 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 33920707 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 6849696 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11309955 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14111300 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr6 | 21795206 | T-G | Homo | INTRON | |
| SBS | Chr7 | 6420450 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18864556 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 4458078 | T-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 21780619 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 28888377 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g249500 |
| SBS | Chr9 | 14690632 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 5570613 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10175581 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 16893995 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16385086 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 5965128 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11376207 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 26311727 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26851523 | T-C | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 5578657 | 5578660 | 3 | |
| Deletion | Chr1 | 5984741 | 5984742 | 1 | |
| Deletion | Chr2 | 6145046 | 6145051 | 5 | |
| Deletion | Chr11 | 6708744 | 6708757 | 13 | |
| Deletion | Chr11 | 6729477 | 6729481 | 4 | |
| Deletion | Chr12 | 6815933 | 6815937 | 4 | |
| Deletion | Chr5 | 9242051 | 9242052 | 1 | |
| Deletion | Chr11 | 10863139 | 10863140 | 1 | |
| Deletion | Chr5 | 17366318 | 17366321 | 3 | |
| Deletion | Chr1 | 21498823 | 21498826 | 3 | OsKitaake01g207788 |
| Deletion | Chr2 | 25293244 | 25293246 | 2 | |
| Deletion | Chr8 | 27279056 | 27279058 | 2 | |
| Deletion | Chr2 | 29670107 | 29670110 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 13745850 | 13745855 | 4 | |
| Insertion | Chr5 | 26039663 | 26039666 | 2 | |
| Insertion | Chr9 | 8900803 | 8900805 | 1 | |
| Insertion | Chr3 | 19260759 | 19260763 | 3 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 1178988 | Chr2 | 5083005 | OsKitaake02g070500 |
| Translocation | Chr10 | 1179215 | Chr2 | 5082995 | OsKitaake02g070500 |