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Mutant Information

Mutant Name	FN3550-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3550-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23937489 G-A Homo INTERGENIC
SBS Chr1 27912733 T-C Homo SYNONYMOUS_CODING
SBS Chr1 33388571 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 41083501 C-T Hetero INTERGENIC
SBS Chr2 1119616 T-C Hetero INTERGENIC
SBS Chr2 5390137 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g074100
SBS Chr2 15273382 G-T Hetero INTERGENIC
SBS Chr3 13911286 G-C Hetero INTERGENIC
SBS Chr3 14986019 C-A Hetero INTRON
SBS Chr4 6045480 C-A Hetero INTERGENIC
SBS Chr4 12811832 C-G Homo INTERGENIC
SBS Chr6 16499560 G-T Hetero INTERGENIC
SBS Chr7 6332750 G-T Hetero INTERGENIC
SBS Chr7 11439964 G-A Hetero INTERGENIC
SBS Chr7 26457642 T-G Homo INTERGENIC
SBS Chr8 14408598 T-A Hetero INTERGENIC
SBS Chr8 19454120 T-A Hetero INTERGENIC
SBS Chr8 19454121 C-T Hetero INTERGENIC
SBS Chr8 23282204 G-A Hetero INTERGENIC
SBS Chr8 23524710 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g181100
SBS Chr9 3077807 G-A Homo INTERGENIC
SBS Chr9 3077808 A-T Homo INTERGENIC
SBS Chr10 4587277 C-T Hetero INTERGENIC
SBS Chr10 6584259 T-C Hetero INTRON
SBS Chr10 20139204 C-T Homo INTRON
SBS Chr11 9222253 G-A Hetero INTERGENIC
SBS Chr11 9222254 G-A Hetero INTERGENIC
SBS Chr11 11612321 A-G Hetero INTERGENIC
SBS Chr11 13344518 C-T Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4450250 4450252 2
Deletion Chr12 11715414 11715569 155
Deletion Chr11 12459798 12459799 1
Deletion Chr1 23302324 23302332 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2534779 2534782 2
Insertion Chr9 22665767 22665772 4

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 17253611 Chr7 20435987
Translocation Chr8 17254657 Chr7 20435983

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23937489	G-A	Homo	INTERGENIC
SBS	Chr1	27912733	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr1	33388571	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	41083501	C-T	Hetero	INTERGENIC
SBS	Chr2	1119616	T-C	Hetero	INTERGENIC
SBS	Chr2	5390137	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g074100
SBS	Chr2	15273382	G-T	Hetero	INTERGENIC
SBS	Chr3	13911286	G-C	Hetero	INTERGENIC
SBS	Chr3	14986019	C-A	Hetero	INTRON
SBS	Chr4	6045480	C-A	Hetero	INTERGENIC
SBS	Chr4	12811832	C-G	Homo	INTERGENIC
SBS	Chr6	16499560	G-T	Hetero	INTERGENIC
SBS	Chr7	6332750	G-T	Hetero	INTERGENIC
SBS	Chr7	11439964	G-A	Hetero	INTERGENIC
SBS	Chr7	26457642	T-G	Homo	INTERGENIC
SBS	Chr8	14408598	T-A	Hetero	INTERGENIC
SBS	Chr8	19454120	T-A	Hetero	INTERGENIC
SBS	Chr8	19454121	C-T	Hetero	INTERGENIC
SBS	Chr8	23282204	G-A	Hetero	INTERGENIC
SBS	Chr8	23524710	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g181100
SBS	Chr9	3077807	G-A	Homo	INTERGENIC
SBS	Chr9	3077808	A-T	Homo	INTERGENIC
SBS	Chr10	4587277	C-T	Hetero	INTERGENIC
SBS	Chr10	6584259	T-C	Hetero	INTRON
SBS	Chr10	20139204	C-T	Homo	INTRON
SBS	Chr11	9222253	G-A	Hetero	INTERGENIC
SBS	Chr11	9222254	G-A	Hetero	INTERGENIC
SBS	Chr11	11612321	A-G	Hetero	INTERGENIC
SBS	Chr11	13344518	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4450250	4450252	2
Deletion	Chr12	11715414	11715569	155
Deletion	Chr11	12459798	12459799	1
Deletion	Chr1	23302324	23302332	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	17253611	Chr7	20435987
Translocation	Chr8	17254657	Chr7	20435983

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes