Search Kitaake

Mutant Information

Mutant Name	FN3551-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3551-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9394872 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g120300
SBS Chr1 13473246 C-T Homo INTERGENIC
SBS Chr1 24883627 G-A Homo INTERGENIC
SBS Chr1 31188621 T-A Hetero INTERGENIC
SBS Chr1 33909398 G-C Homo NON_SYNONYMOUS_CODING OsKitaake01g348500
SBS Chr3 36533130 A-G Homo SYNONYMOUS_CODING
SBS Chr3 36939493 A-G Hetero INTERGENIC
SBS Chr4 32029775 C-T Hetero INTRON
SBS Chr4 32029776 C-T Hetero INTRON
SBS Chr5 11471967 T-C Hetero INTERGENIC
SBS Chr5 14154083 C-T Hetero INTERGENIC
SBS Chr5 22646248 C-T Hetero INTERGENIC
SBS Chr5 24931050 G-A Hetero INTERGENIC
SBS Chr5 27510998 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 3119638 T-A Hetero INTERGENIC
SBS Chr7 5867880 G-A Hetero INTERGENIC
SBS Chr7 9391983 T-G Hetero INTRON
SBS Chr7 13794852 C-T Hetero INTERGENIC
SBS Chr7 28402718 G-A Homo INTERGENIC
SBS Chr8 2130892 T-A Homo INTRON
SBS Chr8 7813944 T-C Hetero INTRON
SBS Chr8 9135740 G-A Homo INTERGENIC
SBS Chr8 17053585 T-A Hetero INTERGENIC
SBS Chr9 1941396 A-T Hetero INTERGENIC
SBS Chr9 2184536 G-A Hetero INTERGENIC
SBS Chr9 8343138 G-C Hetero INTERGENIC
SBS Chr9 11928670 A-G Homo INTERGENIC
SBS Chr10 1087175 C-T Hetero INTERGENIC
SBS Chr10 8966337 G-T Hetero INTERGENIC
SBS Chr10 14499641 C-G Hetero INTERGENIC
SBS Chr10 18222867 A-T Homo INTRON
SBS Chr11 14602776 G-A Homo INTRON
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr12 487071 G-A Homo START_GAINED
SBS Chr12 1044236 G-A Hetero INTERGENIC
SBS Chr12 1451172 G-A Hetero INTRON
SBS Chr12 7986268 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 95879 95880 1
Deletion Chr2 2096888 2096889 1
Deletion Chr12 3484483 3484491 8
Deletion Chr11 12808366 12808368 2
Deletion Chr10 12853618 12853620 2
Deletion Chr10 13605540 13605541 1 OsKitaake10g082000
Deletion Chr12 22437828 22437833 5
Deletion Chr8 27257524 27257526 2
Deletion Chr1 27914466 27914469 3 OsKitaake01g270900

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6777026 6777031 4
Insertion Chr3 4020510 4020513 2
Insertion Chr5 13883899 13883902 2
Insertion Chr12 9072369 9072372 2
Insertion Chr4 24909011 24909013 1
Insertion Chr5 30215229 30215231 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 22366913 Chr1 3004228 OsKitaake01g038000
Translocation Chr8 28960613 Chr1 30478260

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9394872	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g120300
SBS	Chr1	13473246	C-T	Homo	INTERGENIC
SBS	Chr1	24883627	G-A	Homo	INTERGENIC
SBS	Chr1	31188621	T-A	Hetero	INTERGENIC
SBS	Chr1	33909398	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g348500
SBS	Chr3	36533130	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr3	36939493	A-G	Hetero	INTERGENIC
SBS	Chr4	32029775	C-T	Hetero	INTRON
SBS	Chr4	32029776	C-T	Hetero	INTRON
SBS	Chr5	11471967	T-C	Hetero	INTERGENIC
SBS	Chr5	14154083	C-T	Hetero	INTERGENIC
SBS	Chr5	22646248	C-T	Hetero	INTERGENIC
SBS	Chr5	24931050	G-A	Hetero	INTERGENIC
SBS	Chr5	27510998	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	3119638	T-A	Hetero	INTERGENIC
SBS	Chr7	5867880	G-A	Hetero	INTERGENIC
SBS	Chr7	9391983	T-G	Hetero	INTRON
SBS	Chr7	13794852	C-T	Hetero	INTERGENIC
SBS	Chr7	28402718	G-A	Homo	INTERGENIC
SBS	Chr8	2130892	T-A	Homo	INTRON
SBS	Chr8	7813944	T-C	Hetero	INTRON
SBS	Chr8	9135740	G-A	Homo	INTERGENIC
SBS	Chr8	17053585	T-A	Hetero	INTERGENIC
SBS	Chr9	1941396	A-T	Hetero	INTERGENIC
SBS	Chr9	2184536	G-A	Hetero	INTERGENIC
SBS	Chr9	8343138	G-C	Hetero	INTERGENIC
SBS	Chr9	11928670	A-G	Homo	INTERGENIC
SBS	Chr10	1087175	C-T	Hetero	INTERGENIC
SBS	Chr10	8966337	G-T	Hetero	INTERGENIC
SBS	Chr10	14499641	C-G	Hetero	INTERGENIC
SBS	Chr10	18222867	A-T	Homo	INTRON
SBS	Chr11	14602776	G-A	Homo	INTRON
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr12	487071	G-A	Homo	START_GAINED
SBS	Chr12	1044236	G-A	Hetero	INTERGENIC
SBS	Chr12	1451172	G-A	Hetero	INTRON
SBS	Chr12	7986268	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	95879	95880	1
Deletion	Chr2	2096888	2096889	1
Deletion	Chr12	3484483	3484491	8
Deletion	Chr11	12808366	12808368	2
Deletion	Chr10	12853618	12853620	2
Deletion	Chr10	13605540	13605541	1	OsKitaake10g082000
Deletion	Chr12	22437828	22437833	5
Deletion	Chr8	27257524	27257526	2
Deletion	Chr1	27914466	27914469	3	OsKitaake01g270900

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	22366913	Chr1	3004228	OsKitaake01g038000
Translocation	Chr8	28960613	Chr1	30478260

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes