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| Mutant Information |
|---|
| Mutant Name | FN3552-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3552-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16363555 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 40656705 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 30294514 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 35462655 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 822824 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 822825 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3505842 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 10579949 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21232366 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 27608714 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 30602064 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33681609 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 4398157 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 4398162 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 19362568 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26673570 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7109392 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 8370245 | C-T | Homo | INTRON | |
| SBS | Chr6 | 9757352 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6589532 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 1297853 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 24292012 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 21954320 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 16693484 | C-T | Homo | INTRON | |
| SBS | Chr11 | 5214728 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 10759207 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13262648 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13262649 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13434320 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 11057727 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 20776413 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 22442735 | A-G | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3290836 | 3290847 | 11 | |
| Deletion | Chr8 | 4302658 | 4302666 | 8 | |
| Deletion | Chr10 | 5786001 | 5819000 | 32999 | 3 |
| Deletion | Chr10 | 8359973 | 8359979 | 6 | |
| Deletion | Chr11 | 8600001 | 8636000 | 35999 | OsKitaake11g092800 |
| Deletion | Chr4 | 8683253 | 8683254 | 1 | OsKitaake04g044500 |
| Deletion | Chr10 | 10456913 | 10456923 | 10 | |
| Deletion | Chr8 | 12305769 | 12305779 | 10 | |
| Deletion | Chr3 | 14203743 | 14203744 | 1 | OsKitaake03g185300 |
| Deletion | Chr6 | 15717807 | 15717815 | 8 | |
| Deletion | Chr12 | 16368331 | 16368341 | 10 | |
| Deletion | Chr12 | 19600589 | 19600591 | 2 | |
| Deletion | Chr11 | 23808202 | 23808214 | 12 | |
| Deletion | Chr2 | 24796001 | 24825000 | 28999 | 4 |
| Deletion | Chr5 | 30017001 | 30049000 | 31999 | 2 |
| Deletion | Chr1 | 30907835 | 30907836 | 1 | |
| Deletion | Chr2 | 32414001 | 32502000 | 87999 | 13 |
| Deletion | Chr1 | 40657218 | 40657223 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 9702119 | 9702121 | 1 | |
| Insertion | Chr12 | 19123522 | 19123525 | 2 | |
| Insertion | Chr12 | 22409533 | 22409540 | 6 |