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Mutant Information

Mutant Name	FN3553-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3553-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2364703 G-A Hetero INTERGENIC
SBS Chr1 6798727 C-T Homo INTRON
SBS Chr1 6798728 A-T Homo INTRON
SBS Chr1 6812105 A-C Homo INTERGENIC
SBS Chr1 20721072 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g203100
SBS Chr1 38504748 C-T Homo INTERGENIC
SBS Chr1 44264607 C-T Homo INTERGENIC
SBS Chr2 15049293 G-A Hetero INTERGENIC
SBS Chr2 19575816 T-A Hetero INTERGENIC
SBS Chr3 3114241 G-A Homo INTERGENIC
SBS Chr3 8348672 C-A Homo INTRON
SBS Chr3 19141113 T-A Hetero INTERGENIC
SBS Chr3 19141114 T-A Hetero INTERGENIC
SBS Chr3 30631885 G-T Hetero UTR_3_PRIME
SBS Chr3 34310011 T-C Homo INTERGENIC
SBS Chr4 21335 G-A Hetero INTERGENIC
SBS Chr4 13787294 G-A Hetero INTERGENIC
SBS Chr4 15602599 T-G Hetero INTERGENIC
SBS Chr4 25662722 C-T Hetero INTERGENIC
SBS Chr4 34531122 T-A Hetero INTERGENIC
SBS Chr5 2732091 G-T Homo INTERGENIC
SBS Chr5 9950600 T-A Homo INTERGENIC
SBS Chr5 12804259 C-A Hetero INTERGENIC
SBS Chr5 16760515 T-C Homo INTERGENIC
SBS Chr6 23381655 C-A Homo INTERGENIC
SBS Chr7 11702045 C-T Hetero INTRON
SBS Chr8 15006580 C-T Hetero INTERGENIC
SBS Chr8 19292118 C-T Hetero INTERGENIC
SBS Chr8 25083153 T-A Homo INTERGENIC
SBS Chr9 4489559 C-T Hetero INTERGENIC
SBS Chr9 14304021 T-A Hetero INTERGENIC
SBS Chr10 5002694 G-T Homo INTERGENIC
SBS Chr10 5002696 A-T Homo INTERGENIC
SBS Chr10 6685039 A-G Hetero INTERGENIC
SBS Chr10 7745476 C-T Hetero INTERGENIC
SBS Chr10 7745477 A-T Hetero INTERGENIC
SBS Chr10 9502862 T-G Hetero INTERGENIC
SBS Chr11 20773492 C-T Homo UTR_3_PRIME
SBS Chr11 26025787 G-A Hetero INTERGENIC
SBS Chr12 6107401 G-T Hetero SYNONYMOUS_CODING
SBS Chr12 7738346 C-A Hetero INTERGENIC
SBS Chr12 16451860 G-T Hetero INTERGENIC
SBS Chr12 17472911 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g128600
SBS Chr12 17814192 A-T Hetero INTERGENIC
SBS Chr12 19620121 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 105989 105995 6 OsKitaake03g001300
Deletion Chr8 246863 246868 5
Deletion Chr1 6382424 6382426 2
Deletion Chr1 6404846 6404853 7
Deletion Chr6 6513209 6513213 4
Deletion Chr1 6725530 6725538 8
Deletion Chr9 9017255 9017256 1
Deletion Chr10 10710987 10710990 3
Deletion Chr9 16608805 16608806 1
Deletion Chr12 17520001 17545000 24999 2
Deletion Chr12 17574001 17616000 41999 2
Deletion Chr8 19646784 19646786 2
Deletion Chr1 20541456 20541459 3
Deletion Chr1 25109115 25109117 2
Deletion Chr4 27510020 27510029 9 OsKitaake04g201300
Deletion Chr1 43532001 43590000 57999 8
Deletion Chr1 43605677 43605678 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 8379070 8379074 3
Insertion Chr7 29513677 29513680 2
Insertion Chr8 23421230 23421234 3
Insertion Chr11 14625648 14625652 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 5972414 6685998 2
Inversion Chr10 5972415 6686859 2
Inversion Chr12 17543883 18229135

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2364703	G-A	Hetero	INTERGENIC
SBS	Chr1	6798727	C-T	Homo	INTRON
SBS	Chr1	6798728	A-T	Homo	INTRON
SBS	Chr1	6812105	A-C	Homo	INTERGENIC
SBS	Chr1	20721072	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g203100
SBS	Chr1	38504748	C-T	Homo	INTERGENIC
SBS	Chr1	44264607	C-T	Homo	INTERGENIC
SBS	Chr2	15049293	G-A	Hetero	INTERGENIC
SBS	Chr2	19575816	T-A	Hetero	INTERGENIC
SBS	Chr3	3114241	G-A	Homo	INTERGENIC
SBS	Chr3	8348672	C-A	Homo	INTRON
SBS	Chr3	19141113	T-A	Hetero	INTERGENIC
SBS	Chr3	19141114	T-A	Hetero	INTERGENIC
SBS	Chr3	30631885	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	34310011	T-C	Homo	INTERGENIC
SBS	Chr4	21335	G-A	Hetero	INTERGENIC
SBS	Chr4	13787294	G-A	Hetero	INTERGENIC
SBS	Chr4	15602599	T-G	Hetero	INTERGENIC
SBS	Chr4	25662722	C-T	Hetero	INTERGENIC
SBS	Chr4	34531122	T-A	Hetero	INTERGENIC
SBS	Chr5	2732091	G-T	Homo	INTERGENIC
SBS	Chr5	9950600	T-A	Homo	INTERGENIC
SBS	Chr5	12804259	C-A	Hetero	INTERGENIC
SBS	Chr5	16760515	T-C	Homo	INTERGENIC
SBS	Chr6	23381655	C-A	Homo	INTERGENIC
SBS	Chr7	11702045	C-T	Hetero	INTRON
SBS	Chr8	15006580	C-T	Hetero	INTERGENIC
SBS	Chr8	19292118	C-T	Hetero	INTERGENIC
SBS	Chr8	25083153	T-A	Homo	INTERGENIC
SBS	Chr9	4489559	C-T	Hetero	INTERGENIC
SBS	Chr9	14304021	T-A	Hetero	INTERGENIC
SBS	Chr10	5002694	G-T	Homo	INTERGENIC
SBS	Chr10	5002696	A-T	Homo	INTERGENIC
SBS	Chr10	6685039	A-G	Hetero	INTERGENIC
SBS	Chr10	7745476	C-T	Hetero	INTERGENIC
SBS	Chr10	7745477	A-T	Hetero	INTERGENIC
SBS	Chr10	9502862	T-G	Hetero	INTERGENIC
SBS	Chr11	20773492	C-T	Homo	UTR_3_PRIME
SBS	Chr11	26025787	G-A	Hetero	INTERGENIC
SBS	Chr12	6107401	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	7738346	C-A	Hetero	INTERGENIC
SBS	Chr12	16451860	G-T	Hetero	INTERGENIC
SBS	Chr12	17472911	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g128600
SBS	Chr12	17814192	A-T	Hetero	INTERGENIC
SBS	Chr12	19620121	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	105989	105995	6	OsKitaake03g001300
Deletion	Chr8	246863	246868	5
Deletion	Chr1	6382424	6382426	2
Deletion	Chr1	6404846	6404853	7
Deletion	Chr6	6513209	6513213	4
Deletion	Chr1	6725530	6725538	8
Deletion	Chr9	9017255	9017256	1
Deletion	Chr10	10710987	10710990	3
Deletion	Chr9	16608805	16608806	1
Deletion	Chr12	17520001	17545000	24999	2
Deletion	Chr12	17574001	17616000	41999	2
Deletion	Chr8	19646784	19646786	2
Deletion	Chr1	20541456	20541459	3
Deletion	Chr1	25109115	25109117	2
Deletion	Chr4	27510020	27510029	9	OsKitaake04g201300
Deletion	Chr1	43532001	43590000	57999	8
Deletion	Chr1	43605677	43605678	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5972414	6685998	2
Inversion	Chr10	5972415	6686859	2
Inversion	Chr12	17543883	18229135

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes