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| Mutant Information |
|---|
| Mutant Name | FN3554-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3554-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26051278 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13078841 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 28250937 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28510315 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31501197 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 2756134 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 7306189 | C-T | Homo | INTRON | |
| SBS | Chr3 | 15729769 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 23350883 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 25665820 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31305442 | C-T | Homo | INTRON | |
| SBS | Chr3 | 32628708 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g345400 |
| SBS | Chr4 | 703078 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 1473884 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1544786 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2219375 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 6834771 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10802755 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 7239736 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 12158364 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 4326322 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19075384 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 25667308 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2074173 | G-C | Homo | INTRON | |
| SBS | Chr9 | 3907507 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12481180 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 18446094 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 13805981 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21807235 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4322172 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 11732101 | G-A | Hetero | INTRON |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3380221 | 3380222 | 1 | |
| Deletion | Chr9 | 5468444 | 5468449 | 5 | |
| Deletion | Chr9 | 5801913 | 5801917 | 4 | |
| Deletion | Chr11 | 8839001 | 9071000 | 231999 | 12 |
| Deletion | Chr3 | 10158021 | 10158038 | 17 | |
| Deletion | Chr9 | 10472250 | 10472251 | 1 | |
| Deletion | Chr3 | 15301904 | 15301906 | 2 | |
| Deletion | Chr1 | 16160556 | 16160557 | 1 | |
| Deletion | Chr11 | 21863585 | 21863599 | 14 | |
| Deletion | Chr11 | 22109945 | 22109953 | 8 | |
| Deletion | Chr10 | 23917622 | 23917626 | 4 | OsKitaake10g206600 |
| Deletion | Chr11 | 24582262 | 24582265 | 3 | |
| Deletion | Chr2 | 29883846 | 29883852 | 6 | |
| Deletion | Chr1 | 31104059 | 31104074 | 15 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 27077297 | 27077300 | 2 | |
| Insertion | Chr5 | 14569030 | 14569033 | 2 | |
| Insertion | Chr6 | 5878477 | 5878480 | 2 | |
| Insertion | Chr10 | 5106738 | 5106742 | 3 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 4909104 | Chr5 | 4392696 | |
| Translocation | Chr6 | 25589405 | Chr5 | 4391975 | OsKitaake06g227500 |
| Translocation | Chr6 | 25591777 | Chr5 | 4391975 | |
| Translocation | Chr6 | 25591789 | Chr1 | 3082802 | |
| Translocation | Chr6 | 25592392 | Chr1 | 3082798 |