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Mutant Information

Mutant Name	FN3555-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3555-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32287451 C-T Hetero INTERGENIC
SBS Chr2 3921418 T-C Homo INTRON
SBS Chr2 11258675 T-A Hetero INTRON
SBS Chr2 15578175 A-C Homo INTERGENIC
SBS Chr2 25537828 G-C Hetero UTR_5_PRIME
SBS Chr3 10770958 T-A Homo UTR_5_PRIME
SBS Chr4 262321 C-T Hetero UTR_3_PRIME
SBS Chr4 3472365 C-T Hetero INTERGENIC
SBS Chr5 1815815 G-A Hetero INTERGENIC
SBS Chr5 2764240 C-A Homo INTERGENIC
SBS Chr5 22681375 T-C Homo INTRON
SBS Chr6 19502344 G-A Homo INTERGENIC
SBS Chr6 29235657 C-G Hetero INTERGENIC
SBS Chr7 11014513 C-T Hetero INTERGENIC
SBS Chr7 11548312 T-A Homo INTERGENIC
SBS Chr7 25915590 A-G Hetero INTERGENIC
SBS Chr8 9401287 C-T Homo INTERGENIC
SBS Chr8 13211595 C-G Homo INTERGENIC
SBS Chr9 1139800 C-G Hetero INTERGENIC
SBS Chr9 2458107 C-T Hetero INTRON
SBS Chr9 18120784 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g139300
SBS Chr9 18461820 C-T Hetero INTERGENIC
SBS Chr9 19638642 C-T Hetero INTERGENIC
SBS Chr10 2594522 C-T Hetero INTERGENIC
SBS Chr10 4018210 T-A Hetero INTERGENIC
SBS Chr10 7618857 G-A Hetero INTERGENIC
SBS Chr10 9822138 G-C Hetero INTERGENIC
SBS Chr11 3128327 T-A Homo INTERGENIC
SBS Chr11 10105968 G-C Homo INTERGENIC
SBS Chr11 19968545 T-A Hetero INTERGENIC
SBS Chr11 20989979 T-G Hetero INTERGENIC
SBS Chr11 21495193 C-T Hetero INTERGENIC
SBS Chr11 23580697 C-T Hetero INTERGENIC
SBS Chr11 26846734 A-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3351909 3351914 5
Deletion Chr7 5584722 5584730 8
Deletion Chr5 5930631 5930632 1
Deletion Chr9 7695895 7695896 1
Deletion Chr2 11798001 11987000 188999 13
Deletion Chr2 11996001 12027000 30999 2
Deletion Chr9 12914001 13027000 112999 4
Deletion Chr4 13728176 13728179 3
Deletion Chr12 17086801 17086804 3
Deletion Chr4 18838252 18838281 29
Deletion Chr8 19650161 19650167 6
Deletion Chr8 24249035 24249036 1
Deletion Chr4 25639898 25639899 1 OsKitaake04g177900
Deletion Chr3 28140288 28140290 2 OsKitaake03g291100
Deletion Chr1 32287429 32287439 10
Deletion Chr1 34925861 34925870 9
Deletion Chr1 37843909 37843911 2 OsKitaake01g403900
Deletion Chr1 40228554 40228557 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 586101 665114 2
Inversion Chr8 586104 665115 2
Inversion Chr9 12913649 13040386

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12902504 Chr5 5020161
Translocation Chr11 12903092 Chr5 5020136
Translocation Chr10 19092063 Chr3 20319885 OsKitaake10g137300
Translocation Chr10 19107589 Chr3 20319873 OsKitaake10g137500
Translocation Chr10 19107614 Chr4 24253777 OsKitaake10g137500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32287451	C-T	Hetero	INTERGENIC
SBS	Chr2	3921418	T-C	Homo	INTRON
SBS	Chr2	11258675	T-A	Hetero	INTRON
SBS	Chr2	15578175	A-C	Homo	INTERGENIC
SBS	Chr2	25537828	G-C	Hetero	UTR_5_PRIME
SBS	Chr3	10770958	T-A	Homo	UTR_5_PRIME
SBS	Chr4	262321	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	3472365	C-T	Hetero	INTERGENIC
SBS	Chr5	1815815	G-A	Hetero	INTERGENIC
SBS	Chr5	2764240	C-A	Homo	INTERGENIC
SBS	Chr5	22681375	T-C	Homo	INTRON
SBS	Chr6	19502344	G-A	Homo	INTERGENIC
SBS	Chr6	29235657	C-G	Hetero	INTERGENIC
SBS	Chr7	11014513	C-T	Hetero	INTERGENIC
SBS	Chr7	11548312	T-A	Homo	INTERGENIC
SBS	Chr7	25915590	A-G	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Homo	INTERGENIC
SBS	Chr8	13211595	C-G	Homo	INTERGENIC
SBS	Chr9	1139800	C-G	Hetero	INTERGENIC
SBS	Chr9	2458107	C-T	Hetero	INTRON
SBS	Chr9	18120784	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g139300
SBS	Chr9	18461820	C-T	Hetero	INTERGENIC
SBS	Chr9	19638642	C-T	Hetero	INTERGENIC
SBS	Chr10	2594522	C-T	Hetero	INTERGENIC
SBS	Chr10	4018210	T-A	Hetero	INTERGENIC
SBS	Chr10	7618857	G-A	Hetero	INTERGENIC
SBS	Chr10	9822138	G-C	Hetero	INTERGENIC
SBS	Chr11	3128327	T-A	Homo	INTERGENIC
SBS	Chr11	10105968	G-C	Homo	INTERGENIC
SBS	Chr11	19968545	T-A	Hetero	INTERGENIC
SBS	Chr11	20989979	T-G	Hetero	INTERGENIC
SBS	Chr11	21495193	C-T	Hetero	INTERGENIC
SBS	Chr11	23580697	C-T	Hetero	INTERGENIC
SBS	Chr11	26846734	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3351909	3351914	5
Deletion	Chr7	5584722	5584730	8
Deletion	Chr5	5930631	5930632	1
Deletion	Chr9	7695895	7695896	1
Deletion	Chr2	11798001	11987000	188999	13
Deletion	Chr2	11996001	12027000	30999	2
Deletion	Chr9	12914001	13027000	112999	4
Deletion	Chr4	13728176	13728179	3
Deletion	Chr12	17086801	17086804	3
Deletion	Chr4	18838252	18838281	29
Deletion	Chr8	19650161	19650167	6
Deletion	Chr8	24249035	24249036	1
Deletion	Chr4	25639898	25639899	1	OsKitaake04g177900
Deletion	Chr3	28140288	28140290	2	OsKitaake03g291100
Deletion	Chr1	32287429	32287439	10
Deletion	Chr1	34925861	34925870	9
Deletion	Chr1	37843909	37843911	2	OsKitaake01g403900
Deletion	Chr1	40228554	40228557	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	586101	665114	2
Inversion	Chr8	586104	665115	2
Inversion	Chr9	12913649	13040386

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes