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Mutant Information

Mutant Name	FN3556-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3556-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20769930 G-A Hetero INTERGENIC
SBS Chr1 22534071 C-G Hetero INTRON
SBS Chr1 22534429 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 16186985 C-T Hetero INTERGENIC
SBS Chr3 8103237 C-T Hetero INTERGENIC
SBS Chr3 20819908 C-A Homo INTERGENIC
SBS Chr3 26244904 G-C Hetero INTERGENIC
SBS Chr3 30071880 T-C Hetero INTRON
SBS Chr4 333196 A-G Hetero INTERGENIC
SBS Chr4 19557688 T-A Hetero INTERGENIC
SBS Chr5 16828757 C-T Hetero INTERGENIC
SBS Chr6 19588439 C-T Hetero INTERGENIC
SBS Chr6 23640116 C-T Homo INTERGENIC
SBS Chr7 9841494 A-G Hetero INTERGENIC
SBS Chr7 26082593 C-A Homo INTERGENIC
SBS Chr8 2471815 T-C Hetero INTERGENIC
SBS Chr8 6445226 G-A Hetero INTERGENIC
SBS Chr8 20488450 G-A Hetero INTERGENIC
SBS Chr9 4216894 A-C Hetero INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC
SBS Chr11 25096756 C-T Homo INTERGENIC
SBS Chr11 28627558 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g234600

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 81589 81943 354
Deletion Chr7 632694 632695 1
Deletion Chr12 764844 764846 2
Deletion Chr8 3250032 3250048 16
Deletion Chr3 4472552 4472554 2
Deletion Chr1 9092204 9092214 10
Deletion Chr2 10136108 10136110 2 OsKitaake02g121800
Deletion Chr12 13345176 13345177 1
Deletion Chr5 14750014 14750037 23 OsKitaake05g112300
Deletion Chr10 18398228 18398230 2
Deletion Chr12 18510146 18510148 2
Deletion Chr3 20825171 20825172 1
Deletion Chr7 21589187 21589188 1
Deletion Chr8 22543718 22543719 1
Deletion Chr1 24301805 24301810 5
Deletion Chr6 25061131 25061137 6
Deletion Chr8 26300379 26300381 2
Deletion Chr8 28148363 28148365 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 14003013 14003017 3
Insertion Chr9 1396212 1396215 2
Insertion Chr12 23489554 23489556 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6118357 Chr7 29470885 OsKitaake11g073800
Translocation Chr11 6122184 Chr7 29470881
Translocation Chr6 12462628 Chr5 22204145 OsKitaake05g181800
Translocation Chr6 12462632 Chr5 22204387 OsKitaake05g181800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20769930	G-A	Hetero	INTERGENIC
SBS	Chr1	22534071	C-G	Hetero	INTRON
SBS	Chr1	22534429	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	16186985	C-T	Hetero	INTERGENIC
SBS	Chr3	8103237	C-T	Hetero	INTERGENIC
SBS	Chr3	20819908	C-A	Homo	INTERGENIC
SBS	Chr3	26244904	G-C	Hetero	INTERGENIC
SBS	Chr3	30071880	T-C	Hetero	INTRON
SBS	Chr4	333196	A-G	Hetero	INTERGENIC
SBS	Chr4	19557688	T-A	Hetero	INTERGENIC
SBS	Chr5	16828757	C-T	Hetero	INTERGENIC
SBS	Chr6	19588439	C-T	Hetero	INTERGENIC
SBS	Chr6	23640116	C-T	Homo	INTERGENIC
SBS	Chr7	9841494	A-G	Hetero	INTERGENIC
SBS	Chr7	26082593	C-A	Homo	INTERGENIC
SBS	Chr8	2471815	T-C	Hetero	INTERGENIC
SBS	Chr8	6445226	G-A	Hetero	INTERGENIC
SBS	Chr8	20488450	G-A	Hetero	INTERGENIC
SBS	Chr9	4216894	A-C	Hetero	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr11	25096756	C-T	Homo	INTERGENIC
SBS	Chr11	28627558	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g234600

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	81589	81943	354
Deletion	Chr7	632694	632695	1
Deletion	Chr12	764844	764846	2
Deletion	Chr8	3250032	3250048	16
Deletion	Chr3	4472552	4472554	2
Deletion	Chr1	9092204	9092214	10
Deletion	Chr2	10136108	10136110	2	OsKitaake02g121800
Deletion	Chr12	13345176	13345177	1
Deletion	Chr5	14750014	14750037	23	OsKitaake05g112300
Deletion	Chr10	18398228	18398230	2
Deletion	Chr12	18510146	18510148	2
Deletion	Chr3	20825171	20825172	1
Deletion	Chr7	21589187	21589188	1
Deletion	Chr8	22543718	22543719	1
Deletion	Chr1	24301805	24301810	5
Deletion	Chr6	25061131	25061137	6
Deletion	Chr8	26300379	26300381	2
Deletion	Chr8	28148363	28148365	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6118357	Chr7	29470885	OsKitaake11g073800
Translocation	Chr11	6122184	Chr7	29470881
Translocation	Chr6	12462628	Chr5	22204145	OsKitaake05g181800
Translocation	Chr6	12462632	Chr5	22204387	OsKitaake05g181800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes