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Mutant Information

Mutant Name	FN3557-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3557-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17108787 A-C Homo INTERGENIC
SBS Chr1 22857902 G-A Homo INTERGENIC
SBS Chr1 24112178 G-A Homo INTERGENIC
SBS Chr1 34992098 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 5798645 C-A Hetero INTRON
SBS Chr2 20292329 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g197800
SBS Chr2 33994056 C-T Hetero INTERGENIC
SBS Chr3 1387733 T-C Homo INTERGENIC
SBS Chr3 18334688 C-G Hetero INTERGENIC
SBS Chr3 23265137 G-A Hetero INTRON
SBS Chr4 1517715 T-G Homo INTERGENIC
SBS Chr4 3298602 T-A Hetero INTERGENIC
SBS Chr5 3286530 G-A Hetero INTERGENIC
SBS Chr5 6576280 G-A Homo INTERGENIC
SBS Chr6 15299236 T-C Hetero INTERGENIC
SBS Chr6 16565062 A-T Homo INTERGENIC
SBS Chr6 27909674 G-A Hetero INTERGENIC
SBS Chr7 10549430 C-T Hetero INTERGENIC
SBS Chr7 14426433 G-A Hetero INTERGENIC
SBS Chr8 8787705 T-C Hetero INTERGENIC
SBS Chr8 14065663 G-C Homo INTERGENIC
SBS Chr8 26896869 C-A Hetero INTERGENIC
SBS Chr9 586793 C-A Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 15292043 A-C Homo UTR_3_PRIME
SBS Chr10 2052477 G-A Homo INTERGENIC
SBS Chr10 2052478 G-A Homo INTERGENIC
SBS Chr10 15478631 A-T Homo INTRON
SBS Chr11 17163398 A-T Hetero INTERGENIC
SBS Chr11 24337151 C-A Homo INTERGENIC
SBS Chr12 12980486 C-A Homo INTERGENIC
SBS Chr12 26186514 A-G Homo INTRON

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 768410 768417 7
Deletion Chr2 2129876 2129885 9
Deletion Chr10 3237448 3237454 6
Deletion Chr7 8254216 8254219 3
Deletion Chr5 8725531 8725532 1
Deletion Chr12 9057067 9057069 2
Deletion Chr11 10220288 10220297 9
Deletion Chr11 11054348 11054360 12
Deletion Chr4 11284959 11284960 1
Deletion Chr5 14277001 14374000 96999 4
Deletion Chr6 14682279 14682286 7
Deletion Chr3 16642816 16642821 5
Deletion Chr11 17150312 17150329 17
Deletion Chr3 17180276 17180277 1
Deletion Chr2 22704506 22704507 1
Deletion Chr12 23651823 23651826 3
Deletion Chr6 24693521 24693523 2
Deletion Chr6 25008037 25008054 17
Deletion Chr11 27604254 27604278 24
Deletion Chr4 29018114 29018115 1
Deletion Chr5 30258420 30258421 1
Deletion Chr1 31009743 31009749 6
Deletion Chr4 33081537 33081542 5
Deletion Chr1 33922039 33922040 1 OsKitaake01g348700
Deletion Chr4 36463062 36463065 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 626257 626260 2
Insertion Chr1 44159739 44159743 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 11635916 11640619
Inversion Chr4 11635919 11640626

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17108787	A-C	Homo	INTERGENIC
SBS	Chr1	22857902	G-A	Homo	INTERGENIC
SBS	Chr1	24112178	G-A	Homo	INTERGENIC
SBS	Chr1	34992098	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	5798645	C-A	Hetero	INTRON
SBS	Chr2	20292329	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g197800
SBS	Chr2	33994056	C-T	Hetero	INTERGENIC
SBS	Chr3	1387733	T-C	Homo	INTERGENIC
SBS	Chr3	18334688	C-G	Hetero	INTERGENIC
SBS	Chr3	23265137	G-A	Hetero	INTRON
SBS	Chr4	1517715	T-G	Homo	INTERGENIC
SBS	Chr4	3298602	T-A	Hetero	INTERGENIC
SBS	Chr5	3286530	G-A	Hetero	INTERGENIC
SBS	Chr5	6576280	G-A	Homo	INTERGENIC
SBS	Chr6	15299236	T-C	Hetero	INTERGENIC
SBS	Chr6	16565062	A-T	Homo	INTERGENIC
SBS	Chr6	27909674	G-A	Hetero	INTERGENIC
SBS	Chr7	10549430	C-T	Hetero	INTERGENIC
SBS	Chr7	14426433	G-A	Hetero	INTERGENIC
SBS	Chr8	8787705	T-C	Hetero	INTERGENIC
SBS	Chr8	14065663	G-C	Homo	INTERGENIC
SBS	Chr8	26896869	C-A	Hetero	INTERGENIC
SBS	Chr9	586793	C-A	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	15292043	A-C	Homo	UTR_3_PRIME
SBS	Chr10	2052477	G-A	Homo	INTERGENIC
SBS	Chr10	2052478	G-A	Homo	INTERGENIC
SBS	Chr10	15478631	A-T	Homo	INTRON
SBS	Chr11	17163398	A-T	Hetero	INTERGENIC
SBS	Chr11	24337151	C-A	Homo	INTERGENIC
SBS	Chr12	12980486	C-A	Homo	INTERGENIC
SBS	Chr12	26186514	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	768410	768417	7
Deletion	Chr2	2129876	2129885	9
Deletion	Chr10	3237448	3237454	6
Deletion	Chr7	8254216	8254219	3
Deletion	Chr5	8725531	8725532	1
Deletion	Chr12	9057067	9057069	2
Deletion	Chr11	10220288	10220297	9
Deletion	Chr11	11054348	11054360	12
Deletion	Chr4	11284959	11284960	1
Deletion	Chr5	14277001	14374000	96999	4
Deletion	Chr6	14682279	14682286	7
Deletion	Chr3	16642816	16642821	5
Deletion	Chr11	17150312	17150329	17
Deletion	Chr3	17180276	17180277	1
Deletion	Chr2	22704506	22704507	1
Deletion	Chr12	23651823	23651826	3
Deletion	Chr6	24693521	24693523	2
Deletion	Chr6	25008037	25008054	17
Deletion	Chr11	27604254	27604278	24
Deletion	Chr4	29018114	29018115	1
Deletion	Chr5	30258420	30258421	1
Deletion	Chr1	31009743	31009749	6
Deletion	Chr4	33081537	33081542	5
Deletion	Chr1	33922039	33922040	1	OsKitaake01g348700
Deletion	Chr4	36463062	36463065	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11635916	11640619
Inversion	Chr4	11635919	11640626

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes