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Mutant Information

Mutant Name	FN3558-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3558-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17847132 A-T Homo INTERGENIC
SBS Chr2 1181015 G-A Hetero UTR_3_PRIME
SBS Chr2 1607710 A-G Hetero INTERGENIC
SBS Chr2 21629567 G-T Hetero INTERGENIC
SBS Chr3 33946053 C-G Homo UTR_5_PRIME
SBS Chr3 34703688 C-G Homo NON_SYNONYMOUS_CODING OsKitaake03g377800
SBS Chr4 1553655 C-T Homo INTERGENIC
SBS Chr4 8997965 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 28698653 A-T Hetero INTERGENIC
SBS Chr4 31596318 T-G Homo NON_SYNONYMOUS_CODING OsKitaake04g249300
SBS Chr5 4170822 G-A Homo INTERGENIC
SBS Chr5 4170823 G-A Homo INTERGENIC
SBS Chr5 6903826 A-G Homo INTERGENIC
SBS Chr5 10643641 A-G Homo INTRON
SBS Chr5 29900701 C-T Homo SYNONYMOUS_CODING
SBS Chr7 16166206 A-C Homo INTERGENIC
SBS Chr7 17684560 C-T Hetero INTRON
SBS Chr7 22624599 C-T Hetero INTERGENIC
SBS Chr7 22624600 C-G Hetero INTERGENIC
SBS Chr8 23145173 G-T Homo INTRON
SBS Chr8 23145177 T-A Homo INTRON
SBS Chr8 23854951 C-A Homo INTERGENIC
SBS Chr9 9853534 A-T Homo INTERGENIC
SBS Chr9 11798593 G-A Homo INTERGENIC
SBS Chr9 13246325 A-T Hetero INTERGENIC
SBS Chr9 13246326 A-T Hetero INTERGENIC
SBS Chr10 11394352 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g067270
SBS Chr10 16292126 A-G Hetero INTERGENIC
SBS Chr10 19989676 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g150600
SBS Chr11 20239678 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g158000
SBS Chr11 20239679 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g158000
SBS Chr11 21080543 C-T Hetero INTERGENIC
SBS Chr11 23300016 C-A Hetero INTERGENIC
SBS Chr12 2525980 G-T Hetero INTERGENIC
SBS Chr12 4714608 C-T Hetero INTERGENIC
SBS Chr12 8596159 G-T Hetero INTERGENIC
SBS Chr12 19353436 T-C Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1094537 1094555 18 OsKitaake02g016200
Deletion Chr5 4171798 4171819 21
Deletion Chr5 6889559 6889565 6
Deletion Chr9 7248125 7248131 6
Deletion Chr5 8735486 8735490 4
Deletion Chr11 9917254 9917257 3
Deletion Chr5 10640003 10640012 9
Deletion Chr4 10800644 10800650 6
Deletion Chr4 16353735 16353739 4
Deletion Chr11 17058362 17058425 63 OsKitaake11g133400
Deletion Chr6 19711086 19711089 3 OsKitaake06g177000
Deletion Chr11 19858001 19900000 41999 4
Deletion Chr1 23636261 23636269 8
Deletion Chr5 23939001 23975000 35999 3
Deletion Chr3 26737587 26737592 5
Deletion Chr5 27362790 27362797 7
Deletion Chr5 27368979 27368987 8
Deletion Chr3 27601471 27601473 2
Deletion Chr6 29359868 29359869 1 OsKitaake06g271900
Deletion Chr5 29905409 29905414 5 OsKitaake05g286500
Deletion Chr4 33809905 33809912 7
Deletion Chr1 38781001 38814000 32999 15

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36686955 36686958 2
Insertion Chr12 14163022 14163025 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 19723700 19846495
Inversion Chr11 19846502 19894342 OsKitaake11g155800
Inversion Chr8 20342733 20392239
Inversion Chr5 23974846 24040914 OsKitaake05g212600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17847132	A-T	Homo	INTERGENIC
SBS	Chr2	1181015	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	1607710	A-G	Hetero	INTERGENIC
SBS	Chr2	21629567	G-T	Hetero	INTERGENIC
SBS	Chr3	33946053	C-G	Homo	UTR_5_PRIME
SBS	Chr3	34703688	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g377800
SBS	Chr4	1553655	C-T	Homo	INTERGENIC
SBS	Chr4	8997965	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	28698653	A-T	Hetero	INTERGENIC
SBS	Chr4	31596318	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g249300
SBS	Chr5	4170822	G-A	Homo	INTERGENIC
SBS	Chr5	4170823	G-A	Homo	INTERGENIC
SBS	Chr5	6903826	A-G	Homo	INTERGENIC
SBS	Chr5	10643641	A-G	Homo	INTRON
SBS	Chr5	29900701	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	16166206	A-C	Homo	INTERGENIC
SBS	Chr7	17684560	C-T	Hetero	INTRON
SBS	Chr7	22624599	C-T	Hetero	INTERGENIC
SBS	Chr7	22624600	C-G	Hetero	INTERGENIC
SBS	Chr8	23145173	G-T	Homo	INTRON
SBS	Chr8	23145177	T-A	Homo	INTRON
SBS	Chr8	23854951	C-A	Homo	INTERGENIC
SBS	Chr9	9853534	A-T	Homo	INTERGENIC
SBS	Chr9	11798593	G-A	Homo	INTERGENIC
SBS	Chr9	13246325	A-T	Hetero	INTERGENIC
SBS	Chr9	13246326	A-T	Hetero	INTERGENIC
SBS	Chr10	11394352	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g067270
SBS	Chr10	16292126	A-G	Hetero	INTERGENIC
SBS	Chr10	19989676	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g150600
SBS	Chr11	20239678	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g158000
SBS	Chr11	20239679	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g158000
SBS	Chr11	21080543	C-T	Hetero	INTERGENIC
SBS	Chr11	23300016	C-A	Hetero	INTERGENIC
SBS	Chr12	2525980	G-T	Hetero	INTERGENIC
SBS	Chr12	4714608	C-T	Hetero	INTERGENIC
SBS	Chr12	8596159	G-T	Hetero	INTERGENIC
SBS	Chr12	19353436	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1094537	1094555	18	OsKitaake02g016200
Deletion	Chr5	4171798	4171819	21
Deletion	Chr5	6889559	6889565	6
Deletion	Chr9	7248125	7248131	6
Deletion	Chr5	8735486	8735490	4
Deletion	Chr11	9917254	9917257	3
Deletion	Chr5	10640003	10640012	9
Deletion	Chr4	10800644	10800650	6
Deletion	Chr4	16353735	16353739	4
Deletion	Chr11	17058362	17058425	63	OsKitaake11g133400
Deletion	Chr6	19711086	19711089	3	OsKitaake06g177000
Deletion	Chr11	19858001	19900000	41999	4
Deletion	Chr1	23636261	23636269	8
Deletion	Chr5	23939001	23975000	35999	3
Deletion	Chr3	26737587	26737592	5
Deletion	Chr5	27362790	27362797	7
Deletion	Chr5	27368979	27368987	8
Deletion	Chr3	27601471	27601473	2
Deletion	Chr6	29359868	29359869	1	OsKitaake06g271900
Deletion	Chr5	29905409	29905414	5	OsKitaake05g286500
Deletion	Chr4	33809905	33809912	7
Deletion	Chr1	38781001	38814000	32999	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	19723700	19846495
Inversion	Chr11	19846502	19894342	OsKitaake11g155800
Inversion	Chr8	20342733	20392239
Inversion	Chr5	23974846	24040914	OsKitaake05g212600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes