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| Mutant Information |
|---|
| Mutant Name | FN3559-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3559-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8239080 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 12705083 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13022252 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 43841821 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 10059353 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 35691659 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 8890669 | G-C | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 12294662 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15096156 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 33214534 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 3898411 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11098997 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 15647595 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21770354 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 23333369 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 28394553 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2618413 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 13439115 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16457833 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1502941 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1638955 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8626298 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 19968251 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20028107 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 22316910 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 16527681 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18906064 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18957505 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13212638 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21189605 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29532744 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1725777 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 7458147 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11523841 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20130017 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22855378 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g180800 |
| SBS | Chr12 | 25453672 | G-T | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 391197 | 391209 | 12 | |
| Deletion | Chr2 | 983464 | 983465 | 1 | |
| Deletion | Chr6 | 1333581 | 1333583 | 2 | |
| Deletion | Chr8 | 1372545 | 1372551 | 6 | |
| Deletion | Chr5 | 2021301 | 2021311 | 10 | |
| Deletion | Chr4 | 2835049 | 2835053 | 4 | |
| Deletion | Chr11 | 4625565 | 4625572 | 7 | OsKitaake11g060700 |
| Deletion | Chr12 | 7870130 | 7870133 | 3 | |
| Deletion | Chr1 | 8687851 | 8687852 | 1 | |
| Deletion | Chr5 | 9169889 | 9169896 | 7 | |
| Deletion | Chr3 | 9312113 | 9312118 | 5 | |
| Deletion | Chr4 | 10491256 | 10491262 | 6 | |
| Deletion | Chr3 | 11649321 | 11649322 | 1 | |
| Deletion | Chr5 | 16682169 | 16682187 | 18 | |
| Deletion | Chr9 | 18407858 | 18407860 | 2 | |
| Deletion | Chr4 | 23780722 | 23780730 | 8 | |
| Deletion | Chr3 | 24942578 | 24942580 | 2 | OsKitaake03g265300 |
| Deletion | Chr4 | 34796385 | 34796395 | 10 | OsKitaake04g290900 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 9208529 | 9208533 | 3 | |
| Insertion | Chr10 | 2236111 | 2236114 | 2 |
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 11543502 | 11613920 | |
| Inversion | Chr1 | 15218024 | 15248855 | OsKitaake01g145000 |
| Inversion | Chr1 | 15219463 | 15248888 | OsKitaake01g145000 |
| Inversion | Chr9 | 22305097 | 22310003 | 2 |
| Inversion | Chr9 | 22305170 | 22310013 | 2 |
| Inversion | Chr2 | 31567899 | 31570573 | |
| Inversion | Chr2 | 31567901 | 31570574 | |
| Inversion | Chr1 | 31942065 | 32004948 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 8649379 | Chr1 | 32004954 | |
| Translocation | Chr2 | 8652738 | Chr1 | 31942097 | 2 |
| Translocation | Chr5 | 20809009 | Chr3 | 11543506 | |
| Translocation | Chr5 | 20810221 | Chr3 | 15104511 | OsKitaake03g195900 |