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| Mutant Information |
|---|
| Mutant Name | FN3560-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3560-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 18
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18816640 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 22003957 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 31815037 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 43190671 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26622081 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 9970985 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31275959 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16834347 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 17854237 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 25923414 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26807617 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28867645 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7628388 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7769321 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 13449503 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4485316 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 8003926 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11620818 | T-A | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 5941248 | 5941250 | 2 | |
| Deletion | Chr9 | 6843538 | 6843539 | 1 | |
| Deletion | Chr1 | 7226535 | 7226539 | 4 | |
| Deletion | Chr5 | 8623460 | 8623470 | 10 | |
| Deletion | Chr3 | 11555779 | 11555789 | 10 | OsKitaake03g157100 |
| Deletion | Chr7 | 11915334 | 11915339 | 5 | |
| Deletion | Chr6 | 13474276 | 13474285 | 9 | |
| Deletion | Chr5 | 17836130 | 17836154 | 24 | |
| Deletion | Chr8 | 22494242 | 22494243 | 1 | OsKitaake08g171900 |
| Deletion | Chr11 | 24230704 | 24230709 | 5 | |
| Deletion | Chr11 | 25612622 | 25612623 | 1 | |
| Deletion | Chr8 | 26222893 | 26222895 | 2 | |
| Deletion | Chr5 | 27768832 | 27768855 | 23 | |
| Deletion | Chr2 | 29512380 | 29512388 | 8 | |
| Deletion | Chr3 | 33206589 | 33206596 | 7 | |
| Deletion | Chr2 | 35204815 | 35204818 | 3 | |
| Deletion | Chr1 | 42329104 | 42329109 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 36073796 | 36073799 | 2 | |
| Insertion | Chr9 | 22193184 | 22193188 | 3 | |
| Insertion | Chr10 | 8005993 | 8005997 | 3 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 2262451 | 2638071 | OsKitaake02g037900 |