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| Mutant Information |
|---|
| Mutant Name | FN3561-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3561-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 30015592 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19324868 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 19279220 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 24361849 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g157900 |
| SBS | Chr4 | 29793817 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14874986 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 29396208 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 9834750 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10172510 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14865945 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 17647152 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27615609 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 2896619 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 8095269 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 27930667 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 3692016 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7969925 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15258391 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 22146805 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 24083025 | C-T | Homo | INTRON | |
| SBS | Chr12 | 16226467 | G-T | Homo | INTRON |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 138160 | 138167 | 7 | |
| Deletion | Chr7 | 2896679 | 2896680 | 1 | |
| Deletion | Chr7 | 3082624 | 3082631 | 7 | |
| Deletion | Chr9 | 3881375 | 3881376 | 1 | |
| Deletion | Chr8 | 6123460 | 6123468 | 8 | |
| Deletion | Chr2 | 6538202 | 6538205 | 3 | OsKitaake02g088900 |
| Deletion | Chr4 | 7200229 | 7200234 | 5 | |
| Deletion | Chr7 | 9122006 | 9122011 | 5 | |
| Deletion | Chr12 | 10580139 | 10580157 | 18 | |
| Deletion | Chr10 | 12584059 | 12584060 | 1 | |
| Deletion | Chr1 | 14330637 | 14330653 | 16 | OsKitaake01g163400 |
| Deletion | Chr3 | 14469257 | 14469260 | 3 | |
| Deletion | Chr10 | 16753899 | 16753917 | 18 | |
| Deletion | Chr4 | 17415430 | 17415437 | 7 | |
| Deletion | Chr1 | 18832001 | 18931000 | 98999 | 7 |
| Deletion | Chr12 | 19153001 | 19276000 | 122999 | 24 |
| Deletion | Chr7 | 20119016 | 20119017 | 1 | |
| Deletion | Chr6 | 23906867 | 23906905 | 38 | |
| Deletion | Chr5 | 24344473 | 24344474 | 1 | |
| Deletion | Chr6 | 24983123 | 24983126 | 3 | |
| Deletion | Chr5 | 27743430 | 27743438 | 8 | OsKitaake05g253900 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 31988289 | 31988292 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 29900741 | Chr2 | 16149151 | OsKitaake05g286500 |
| Translocation | Chr5 | 29901049 | Chr2 | 16133790 | 2 |