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Mutant Information

Mutant Name	FN3562-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3562-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10068388 C-T Hetero INTERGENIC
SBS Chr1 11949538 A-T Hetero INTERGENIC
SBS Chr1 30100609 T-C Hetero INTERGENIC
SBS Chr2 4620498 T-A Homo INTERGENIC
SBS Chr2 14572605 G-A Homo INTERGENIC
SBS Chr2 14611460 G-A Hetero INTERGENIC
SBS Chr2 18147695 G-T Hetero INTRON
SBS Chr2 23458515 G-A Hetero INTRON
SBS Chr3 28942124 G-A Homo INTERGENIC
SBS Chr3 28942125 T-A Homo INTERGENIC
SBS Chr3 28942131 G-A Homo INTERGENIC
SBS Chr3 28942132 T-A Homo INTERGENIC
SBS Chr3 36817215 A-G Hetero UTR_3_PRIME
SBS Chr4 1433587 T-C Hetero INTERGENIC
SBS Chr4 10907485 C-T Hetero INTERGENIC
SBS Chr4 22136436 G-A Hetero INTERGENIC
SBS Chr5 5907640 T-C Homo INTERGENIC
SBS Chr5 17261854 A-T Hetero INTERGENIC
SBS Chr6 9432593 T-C Hetero INTERGENIC
SBS Chr6 10884621 G-A Hetero INTERGENIC
SBS Chr7 6604978 G-A Hetero INTERGENIC
SBS Chr7 25461660 T-A Hetero INTERGENIC
SBS Chr7 25461661 T-A Hetero INTERGENIC
SBS Chr8 1671387 A-T Hetero INTERGENIC
SBS Chr8 2851724 A-G Hetero INTERGENIC
SBS Chr8 11479527 A-G Homo INTERGENIC
SBS Chr8 15485107 C-T Homo INTERGENIC
SBS Chr8 25160339 C-T Hetero INTERGENIC
SBS Chr9 16563550 C-T Homo INTERGENIC
SBS Chr10 3130238 G-A Hetero INTERGENIC
SBS Chr10 9441313 A-G Hetero UTR_3_PRIME
SBS Chr11 5888833 G-A Hetero INTERGENIC
SBS Chr12 2039860 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2965292 2965293 1
Deletion Chr11 5446958 5446959 1
Deletion Chr2 10439345 10439348 3
Deletion Chr11 17530127 17530128 1
Deletion Chr6 19401985 19401987 2
Deletion Chr3 20645001 20889000 243999 13
Deletion Chr5 23634277 23634279 2
Deletion Chr11 24812023 24812043 20
Deletion Chr8 26166221 26166232 11
Deletion Chr2 27185001 27204000 18999 3
Deletion Chr3 28460467 28460469 2
Deletion Chr3 28988738 28988757 19 OsKitaake03g301500
Deletion Chr3 29401075 29401084 9
Deletion Chr2 31013390 31013396 6
Deletion Chr1 31207327 31207328 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1731659 1731661 1
Insertion Chr8 12665978 12665980 1
Insertion Chr9 19027882 19027885 2
Insertion Chr12 8819840 8819844 3
Insertion Chr12 17566882 17566887 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 10853595 11200190
Inversion Chr8 10853610 11200202

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10068388	C-T	Hetero	INTERGENIC
SBS	Chr1	11949538	A-T	Hetero	INTERGENIC
SBS	Chr1	30100609	T-C	Hetero	INTERGENIC
SBS	Chr2	4620498	T-A	Homo	INTERGENIC
SBS	Chr2	14572605	G-A	Homo	INTERGENIC
SBS	Chr2	14611460	G-A	Hetero	INTERGENIC
SBS	Chr2	18147695	G-T	Hetero	INTRON
SBS	Chr2	23458515	G-A	Hetero	INTRON
SBS	Chr3	28942124	G-A	Homo	INTERGENIC
SBS	Chr3	28942125	T-A	Homo	INTERGENIC
SBS	Chr3	28942131	G-A	Homo	INTERGENIC
SBS	Chr3	28942132	T-A	Homo	INTERGENIC
SBS	Chr3	36817215	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	1433587	T-C	Hetero	INTERGENIC
SBS	Chr4	10907485	C-T	Hetero	INTERGENIC
SBS	Chr4	22136436	G-A	Hetero	INTERGENIC
SBS	Chr5	5907640	T-C	Homo	INTERGENIC
SBS	Chr5	17261854	A-T	Hetero	INTERGENIC
SBS	Chr6	9432593	T-C	Hetero	INTERGENIC
SBS	Chr6	10884621	G-A	Hetero	INTERGENIC
SBS	Chr7	6604978	G-A	Hetero	INTERGENIC
SBS	Chr7	25461660	T-A	Hetero	INTERGENIC
SBS	Chr7	25461661	T-A	Hetero	INTERGENIC
SBS	Chr8	1671387	A-T	Hetero	INTERGENIC
SBS	Chr8	2851724	A-G	Hetero	INTERGENIC
SBS	Chr8	11479527	A-G	Homo	INTERGENIC
SBS	Chr8	15485107	C-T	Homo	INTERGENIC
SBS	Chr8	25160339	C-T	Hetero	INTERGENIC
SBS	Chr9	16563550	C-T	Homo	INTERGENIC
SBS	Chr10	3130238	G-A	Hetero	INTERGENIC
SBS	Chr10	9441313	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	5888833	G-A	Hetero	INTERGENIC
SBS	Chr12	2039860	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2965292	2965293	1
Deletion	Chr11	5446958	5446959	1
Deletion	Chr2	10439345	10439348	3
Deletion	Chr11	17530127	17530128	1
Deletion	Chr6	19401985	19401987	2
Deletion	Chr3	20645001	20889000	243999	13
Deletion	Chr5	23634277	23634279	2
Deletion	Chr11	24812023	24812043	20
Deletion	Chr8	26166221	26166232	11
Deletion	Chr2	27185001	27204000	18999	3
Deletion	Chr3	28460467	28460469	2
Deletion	Chr3	28988738	28988757	19	OsKitaake03g301500
Deletion	Chr3	29401075	29401084	9
Deletion	Chr2	31013390	31013396	6
Deletion	Chr1	31207327	31207328	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10853595	11200190
Inversion	Chr8	10853610	11200202

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes