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Mutant Information

Mutant Name	FN3563-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3563-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16159073 A-T Homo INTERGENIC
SBS Chr1 17324979 C-T Hetero INTERGENIC
SBS Chr1 29504142 T-C Hetero INTERGENIC
SBS Chr1 40590765 A-T Hetero INTRON
SBS Chr2 25801800 G-A Hetero INTERGENIC
SBS Chr3 23471048 G-T Hetero INTRON
SBS Chr3 28168050 G-T Homo INTERGENIC
SBS Chr3 32195503 A-T Hetero INTERGENIC
SBS Chr4 3485431 G-C Homo INTERGENIC
SBS Chr4 4034203 G-A Homo UTR_5_PRIME
SBS Chr4 18134270 C-T Hetero INTERGENIC
SBS Chr4 26264309 A-C Hetero INTRON
SBS Chr4 26264327 G-A Hetero INTRON
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr5 6508540 G-T Homo INTERGENIC
SBS Chr6 7889216 C-T Hetero INTERGENIC
SBS Chr6 11279878 C-T Homo INTERGENIC
SBS Chr6 20538876 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g184000
SBS Chr7 16645612 G-T Homo INTERGENIC
SBS Chr7 17904690 A-G Hetero INTERGENIC
SBS Chr8 7392145 C-T Hetero INTERGENIC
SBS Chr8 13082950 A-T Hetero INTERGENIC
SBS Chr8 18212230 G-A Hetero INTERGENIC
SBS Chr8 20135663 A-G Hetero INTERGENIC
SBS Chr9 16778733 G-A Homo INTRON
SBS Chr9 17421660 A-T Hetero INTERGENIC
SBS Chr9 20453107 G-A Homo INTRON
SBS Chr10 7332244 C-A Hetero INTERGENIC
SBS Chr10 11167077 G-A Hetero INTERGENIC
SBS Chr10 12695829 T-A Hetero INTERGENIC
SBS Chr10 12695830 T-A Hetero INTERGENIC
SBS Chr10 22965024 T-C Hetero INTERGENIC
SBS Chr11 20419079 A-G Hetero INTRON
SBS Chr12 2867292 G-A Homo INTERGENIC
SBS Chr12 11292297 C-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 640108 640111 3
Deletion Chr12 1382504 1382511 7 OsKitaake12g020500
Deletion Chr10 3121232 3121238 6
Deletion Chr7 5783622 5783630 8
Deletion Chr6 6794359 6794367 8
Deletion Chr3 7044285 7044289 4
Deletion Chr7 8320560 8320568 8
Deletion Chr3 10145534 10145536 2
Deletion Chr7 12292475 12292482 7
Deletion Chr5 12428440 12428441 1
Deletion Chr11 12829883 12829891 8
Deletion Chr9 14282365 14282367 2
Deletion Chr3 15754838 15754840 2
Deletion Chr12 16426756 16426780 24
Deletion Chr7 16843498 16843499 1
Deletion Chr12 16912801 16912821 20
Deletion Chr3 18524758 18524767 9
Deletion Chr9 20090803 20090810 7 OsKitaake09g167900
Deletion Chr8 21512716 21512718 2
Deletion Chr3 23786367 23786375 8
Deletion Chr8 25005453 25005454 1
Deletion Chr12 25354631 25354636 5
Deletion Chr1 25742595 25742596 1
Deletion Chr1 27062725 27062733 8
Deletion Chr6 30891544 30891550 6
Deletion Chr6 30895233 30895239 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7758688 7758690 1
Insertion Chr1 38734287 38734292 4
Insertion Chr3 5617063 5617066 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 18790464 18870875
Inversion Chr10 18790469 18870876

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16159073	A-T	Homo	INTERGENIC
SBS	Chr1	17324979	C-T	Hetero	INTERGENIC
SBS	Chr1	29504142	T-C	Hetero	INTERGENIC
SBS	Chr1	40590765	A-T	Hetero	INTRON
SBS	Chr2	25801800	G-A	Hetero	INTERGENIC
SBS	Chr3	23471048	G-T	Hetero	INTRON
SBS	Chr3	28168050	G-T	Homo	INTERGENIC
SBS	Chr3	32195503	A-T	Hetero	INTERGENIC
SBS	Chr4	3485431	G-C	Homo	INTERGENIC
SBS	Chr4	4034203	G-A	Homo	UTR_5_PRIME
SBS	Chr4	18134270	C-T	Hetero	INTERGENIC
SBS	Chr4	26264309	A-C	Hetero	INTRON
SBS	Chr4	26264327	G-A	Hetero	INTRON
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr5	6508540	G-T	Homo	INTERGENIC
SBS	Chr6	7889216	C-T	Hetero	INTERGENIC
SBS	Chr6	11279878	C-T	Homo	INTERGENIC
SBS	Chr6	20538876	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g184000
SBS	Chr7	16645612	G-T	Homo	INTERGENIC
SBS	Chr7	17904690	A-G	Hetero	INTERGENIC
SBS	Chr8	7392145	C-T	Hetero	INTERGENIC
SBS	Chr8	13082950	A-T	Hetero	INTERGENIC
SBS	Chr8	18212230	G-A	Hetero	INTERGENIC
SBS	Chr8	20135663	A-G	Hetero	INTERGENIC
SBS	Chr9	16778733	G-A	Homo	INTRON
SBS	Chr9	17421660	A-T	Hetero	INTERGENIC
SBS	Chr9	20453107	G-A	Homo	INTRON
SBS	Chr10	7332244	C-A	Hetero	INTERGENIC
SBS	Chr10	11167077	G-A	Hetero	INTERGENIC
SBS	Chr10	12695829	T-A	Hetero	INTERGENIC
SBS	Chr10	12695830	T-A	Hetero	INTERGENIC
SBS	Chr10	22965024	T-C	Hetero	INTERGENIC
SBS	Chr11	20419079	A-G	Hetero	INTRON
SBS	Chr12	2867292	G-A	Homo	INTERGENIC
SBS	Chr12	11292297	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	640108	640111	3
Deletion	Chr12	1382504	1382511	7	OsKitaake12g020500
Deletion	Chr10	3121232	3121238	6
Deletion	Chr7	5783622	5783630	8
Deletion	Chr6	6794359	6794367	8
Deletion	Chr3	7044285	7044289	4
Deletion	Chr7	8320560	8320568	8
Deletion	Chr3	10145534	10145536	2
Deletion	Chr7	12292475	12292482	7
Deletion	Chr5	12428440	12428441	1
Deletion	Chr11	12829883	12829891	8
Deletion	Chr9	14282365	14282367	2
Deletion	Chr3	15754838	15754840	2
Deletion	Chr12	16426756	16426780	24
Deletion	Chr7	16843498	16843499	1
Deletion	Chr12	16912801	16912821	20
Deletion	Chr3	18524758	18524767	9
Deletion	Chr9	20090803	20090810	7	OsKitaake09g167900
Deletion	Chr8	21512716	21512718	2
Deletion	Chr3	23786367	23786375	8
Deletion	Chr8	25005453	25005454	1
Deletion	Chr12	25354631	25354636	5
Deletion	Chr1	25742595	25742596	1
Deletion	Chr1	27062725	27062733	8
Deletion	Chr6	30891544	30891550	6
Deletion	Chr6	30895233	30895239	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18790464	18870875
Inversion	Chr10	18790469	18870876

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes