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Mutant Information

Mutant Name	FN3564-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3564-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7511311 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g094000
SBS Chr1 8594258 T-A Hetero INTRON
SBS Chr1 9353991 G-A Hetero INTRON
SBS Chr1 16113507 T-G Hetero INTERGENIC
SBS Chr1 29720703 C-T Hetero INTERGENIC
SBS Chr1 29805900 C-A Hetero INTERGENIC
SBS Chr1 35796728 G-C Hetero INTERGENIC
SBS Chr2 6674102 T-C Hetero INTERGENIC
SBS Chr2 9223900 G-A Hetero INTERGENIC
SBS Chr2 9223902 T-A Hetero INTERGENIC
SBS Chr2 9223904 C-T Hetero INTERGENIC
SBS Chr2 17782744 C-G Homo INTERGENIC
SBS Chr2 23766973 G-A Homo INTERGENIC
SBS Chr3 8827059 C-T Hetero INTRON
SBS Chr3 18320910 A-G Hetero INTERGENIC
SBS Chr3 19295068 G-A Hetero INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr3 29684898 G-T Homo INTRON
SBS Chr3 32854321 T-C Hetero INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr3 35768946 A-T Hetero INTERGENIC
SBS Chr4 5425576 T-G Hetero INTERGENIC
SBS Chr4 9072739 C-G Homo INTERGENIC
SBS Chr4 16899923 A-G Hetero INTERGENIC
SBS Chr4 17073913 G-A Homo INTERGENIC
SBS Chr5 61681 G-A Hetero INTERGENIC
SBS Chr5 2519583 G-A Hetero INTERGENIC
SBS Chr5 19284633 T-C Homo INTERGENIC
SBS Chr6 825046 A-C Hetero INTERGENIC
SBS Chr6 9344316 A-T Hetero INTERGENIC
SBS Chr7 6346632 C-A Hetero INTERGENIC
SBS Chr7 8730819 C-T Hetero INTERGENIC
SBS Chr8 16433668 G-A Hetero INTERGENIC
SBS Chr8 19907360 A-G Homo INTERGENIC
SBS Chr10 6477693 C-A Hetero INTERGENIC
SBS Chr10 10655577 G-A Hetero INTERGENIC
SBS Chr11 14209597 T-A Hetero INTRON
SBS Chr11 14209598 C-T Hetero INTRON
SBS Chr11 15711939 G-C Hetero INTRON
SBS Chr11 19666276 C-T Hetero INTERGENIC
SBS Chr11 29060102 C-T Hetero INTERGENIC
SBS Chr12 14886421 A-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 409104 409106 2
Deletion Chr5 2952708 2952709 1
Deletion Chr6 3995039 3995066 27
Deletion Chr9 5098078 5098085 7
Deletion Chr12 6310618 6310622 4
Deletion Chr5 6469469 6469478 9
Deletion Chr7 9398959 9398962 3 OsKitaake07g096200
Deletion Chr1 12517045 12517047 2
Deletion Chr11 14156489 14156490 1
Deletion Chr12 20109691 20109693 2
Deletion Chr12 23696001 23705000 8999 OsKitaake12g190600
Deletion Chr2 24000807 24000827 20
Deletion Chr8 24418121 24418122 1
Deletion Chr2 31046563 31046564 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 332023 332026 2
Insertion Chr5 26912875 26912878 2
Insertion Chr7 20549615 20549618 2
Insertion Chr8 25971577 25971581 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1980533 2230233 2
Inversion Chr5 1980535 2230238 2
Inversion Chr1 34678762 35150124 2
Inversion Chr1 34678781 35150141 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13149799 Chr3 24791365

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7511311	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g094000
SBS	Chr1	8594258	T-A	Hetero	INTRON
SBS	Chr1	9353991	G-A	Hetero	INTRON
SBS	Chr1	16113507	T-G	Hetero	INTERGENIC
SBS	Chr1	29720703	C-T	Hetero	INTERGENIC
SBS	Chr1	29805900	C-A	Hetero	INTERGENIC
SBS	Chr1	35796728	G-C	Hetero	INTERGENIC
SBS	Chr2	6674102	T-C	Hetero	INTERGENIC
SBS	Chr2	9223900	G-A	Hetero	INTERGENIC
SBS	Chr2	9223902	T-A	Hetero	INTERGENIC
SBS	Chr2	9223904	C-T	Hetero	INTERGENIC
SBS	Chr2	17782744	C-G	Homo	INTERGENIC
SBS	Chr2	23766973	G-A	Homo	INTERGENIC
SBS	Chr3	8827059	C-T	Hetero	INTRON
SBS	Chr3	18320910	A-G	Hetero	INTERGENIC
SBS	Chr3	19295068	G-A	Hetero	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr3	29684898	G-T	Homo	INTRON
SBS	Chr3	32854321	T-C	Hetero	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr3	35768946	A-T	Hetero	INTERGENIC
SBS	Chr4	5425576	T-G	Hetero	INTERGENIC
SBS	Chr4	9072739	C-G	Homo	INTERGENIC
SBS	Chr4	16899923	A-G	Hetero	INTERGENIC
SBS	Chr4	17073913	G-A	Homo	INTERGENIC
SBS	Chr5	61681	G-A	Hetero	INTERGENIC
SBS	Chr5	2519583	G-A	Hetero	INTERGENIC
SBS	Chr5	19284633	T-C	Homo	INTERGENIC
SBS	Chr6	825046	A-C	Hetero	INTERGENIC
SBS	Chr6	9344316	A-T	Hetero	INTERGENIC
SBS	Chr7	6346632	C-A	Hetero	INTERGENIC
SBS	Chr7	8730819	C-T	Hetero	INTERGENIC
SBS	Chr8	16433668	G-A	Hetero	INTERGENIC
SBS	Chr8	19907360	A-G	Homo	INTERGENIC
SBS	Chr10	6477693	C-A	Hetero	INTERGENIC
SBS	Chr10	10655577	G-A	Hetero	INTERGENIC
SBS	Chr11	14209597	T-A	Hetero	INTRON
SBS	Chr11	14209598	C-T	Hetero	INTRON
SBS	Chr11	15711939	G-C	Hetero	INTRON
SBS	Chr11	19666276	C-T	Hetero	INTERGENIC
SBS	Chr11	29060102	C-T	Hetero	INTERGENIC
SBS	Chr12	14886421	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	409104	409106	2
Deletion	Chr5	2952708	2952709	1
Deletion	Chr6	3995039	3995066	27
Deletion	Chr9	5098078	5098085	7
Deletion	Chr12	6310618	6310622	4
Deletion	Chr5	6469469	6469478	9
Deletion	Chr7	9398959	9398962	3	OsKitaake07g096200
Deletion	Chr1	12517045	12517047	2
Deletion	Chr11	14156489	14156490	1
Deletion	Chr12	20109691	20109693	2
Deletion	Chr12	23696001	23705000	8999	OsKitaake12g190600
Deletion	Chr2	24000807	24000827	20
Deletion	Chr8	24418121	24418122	1
Deletion	Chr2	31046563	31046564	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1980533	2230233	2
Inversion	Chr5	1980535	2230238	2
Inversion	Chr1	34678762	35150124	2
Inversion	Chr1	34678781	35150141	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes