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Mutant Information

Mutant Name	FN3565-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3565-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31270627 T-C Homo INTERGENIC
SBS Chr1 37203018 C-T Hetero INTERGENIC
SBS Chr1 38168489 C-T Hetero INTRON
SBS Chr2 14944020 A-G Homo INTERGENIC
SBS Chr2 24895880 A-T Homo INTERGENIC
SBS Chr3 10436498 T-A Hetero INTERGENIC
SBS Chr3 19331974 A-T Hetero INTERGENIC
SBS Chr3 19408732 T-A Hetero INTERGENIC
SBS Chr3 24399133 G-A Hetero INTERGENIC
SBS Chr3 34878264 T-G Homo INTRON
SBS Chr3 35820977 C-T Hetero INTERGENIC
SBS Chr5 1423238 C-T Hetero INTERGENIC
SBS Chr5 11344923 T-C Hetero INTERGENIC
SBS Chr5 12157544 C-A Hetero INTERGENIC
SBS Chr5 13052283 C-T Hetero INTERGENIC
SBS Chr5 24256364 C-A Hetero INTERGENIC
SBS Chr7 12187014 A-C Hetero INTRON
SBS Chr8 18732189 G-A Hetero INTERGENIC
SBS Chr8 18969110 G-C Hetero INTERGENIC
SBS Chr10 2042528 A-G Hetero INTERGENIC
SBS Chr10 7956746 G-A Hetero INTERGENIC
SBS Chr11 20239318 G-A Hetero INTERGENIC
SBS Chr12 5541397 G-T Homo INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 134388 134389 1
Deletion Chr6 2708188 2708189 1 OsKitaake06g036900
Deletion Chr5 2891900 2891910 10
Deletion Chr1 5139357 5139362 5
Deletion Chr12 5541429 5541435 6
Deletion Chr3 6215702 6215705 3
Deletion Chr3 12463035 12463046 11
Deletion Chr6 12533735 12533738 3
Deletion Chr4 14758890 14758896 6
Deletion Chr8 16638138 16638144 6
Deletion Chr10 17731119 17731120 1
Deletion Chr8 25243595 25243598 3
Deletion Chr7 28263682 28263687 5 OsKitaake07g267200
Deletion Chr7 28444001 28668000 223999 31
Deletion Chr3 31545472 31545477 5
Deletion Chr4 32166796 32166805 9
Deletion Chr2 33355616 33355619 3
Deletion Chr2 33685795 33685796 1 OsKitaake02g348300

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1349687 1349690 2
Insertion Chr2 21530175 21530178 2
Insertion Chr3 32678894 32678899 4
Insertion Chr4 6060585 6060592 6
Insertion Chr9 9861134 9861137 2
Insertion Chr11 1450627 1450634 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31270627	T-C	Homo	INTERGENIC
SBS	Chr1	37203018	C-T	Hetero	INTERGENIC
SBS	Chr1	38168489	C-T	Hetero	INTRON
SBS	Chr2	14944020	A-G	Homo	INTERGENIC
SBS	Chr2	24895880	A-T	Homo	INTERGENIC
SBS	Chr3	10436498	T-A	Hetero	INTERGENIC
SBS	Chr3	19331974	A-T	Hetero	INTERGENIC
SBS	Chr3	19408732	T-A	Hetero	INTERGENIC
SBS	Chr3	24399133	G-A	Hetero	INTERGENIC
SBS	Chr3	34878264	T-G	Homo	INTRON
SBS	Chr3	35820977	C-T	Hetero	INTERGENIC
SBS	Chr5	1423238	C-T	Hetero	INTERGENIC
SBS	Chr5	11344923	T-C	Hetero	INTERGENIC
SBS	Chr5	12157544	C-A	Hetero	INTERGENIC
SBS	Chr5	13052283	C-T	Hetero	INTERGENIC
SBS	Chr5	24256364	C-A	Hetero	INTERGENIC
SBS	Chr7	12187014	A-C	Hetero	INTRON
SBS	Chr8	18732189	G-A	Hetero	INTERGENIC
SBS	Chr8	18969110	G-C	Hetero	INTERGENIC
SBS	Chr10	2042528	A-G	Hetero	INTERGENIC
SBS	Chr10	7956746	G-A	Hetero	INTERGENIC
SBS	Chr11	20239318	G-A	Hetero	INTERGENIC
SBS	Chr12	5541397	G-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	134388	134389	1
Deletion	Chr6	2708188	2708189	1	OsKitaake06g036900
Deletion	Chr5	2891900	2891910	10
Deletion	Chr1	5139357	5139362	5
Deletion	Chr12	5541429	5541435	6
Deletion	Chr3	6215702	6215705	3
Deletion	Chr3	12463035	12463046	11
Deletion	Chr6	12533735	12533738	3
Deletion	Chr4	14758890	14758896	6
Deletion	Chr8	16638138	16638144	6
Deletion	Chr10	17731119	17731120	1
Deletion	Chr8	25243595	25243598	3
Deletion	Chr7	28263682	28263687	5	OsKitaake07g267200
Deletion	Chr7	28444001	28668000	223999	31
Deletion	Chr3	31545472	31545477	5
Deletion	Chr4	32166796	32166805	9
Deletion	Chr2	33355616	33355619	3
Deletion	Chr2	33685795	33685796	1	OsKitaake02g348300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes