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Mutant Information

Mutant Name	FN3566-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3566-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 12935645 T-A Hetero INTERGENIC
SBS Chr2 17055259 G-A Homo INTERGENIC
SBS Chr3 18813515 T-G Hetero INTERGENIC
SBS Chr3 19266506 A-G Hetero INTERGENIC
SBS Chr3 21158606 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g234400
SBS Chr3 22863761 G-A Hetero INTRON
SBS Chr3 22863762 C-A Hetero INTRON
SBS Chr3 25942219 T-G Hetero INTERGENIC
SBS Chr3 26862433 G-A Hetero INTERGENIC
SBS Chr3 36158982 A-T Homo INTRON
SBS Chr4 1538502 C-T Homo INTERGENIC
SBS Chr5 5395835 A-T Hetero INTERGENIC
SBS Chr5 12165387 C-T Hetero INTERGENIC
SBS Chr6 2157787 C-T Hetero INTERGENIC
SBS Chr6 4257629 C-G Hetero INTERGENIC
SBS Chr6 11726319 G-A Homo INTERGENIC
SBS Chr6 18627726 C-T Hetero INTERGENIC
SBS Chr7 5892767 T-C Homo INTERGENIC
SBS Chr7 14396634 C-T Homo INTERGENIC
SBS Chr7 18493471 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g150200
SBS Chr7 26181936 G-C Homo INTERGENIC
SBS Chr8 27120078 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g221500
SBS Chr8 27120083 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g221500
SBS Chr8 27130368 A-T Hetero INTERGENIC
SBS Chr9 21688093 C-G Hetero SYNONYMOUS_CODING
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 11224893 A-T Hetero INTERGENIC
SBS Chr11 10813137 C-T Hetero INTERGENIC
SBS Chr11 29398206 T-G Homo INTERGENIC
SBS Chr12 9862663 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1396434 1396438 4
Deletion Chr7 1563972 1564012 40
Deletion Chr9 3318720 3318722 2
Deletion Chr3 10698911 10698915 4 OsKitaake03g146900
Deletion Chr10 11139204 11139219 15
Deletion Chr6 16021001 16033000 11999 2
Deletion Chr7 18498534 18498538 4 OsKitaake07g150300
Deletion Chr10 21843503 21843505 2
Deletion Chr7 23705506 23705509 3
Deletion Chr3 24041811 24041816 5
Deletion Chr11 24281317 24281319 2
Deletion Chr5 24344053 24344065 12
Deletion Chr4 35303353 35303383 30
Deletion Chr4 36600160 36600167 7
Deletion Chr1 41417162 41417163 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28999767 28999769 1
Insertion Chr8 21322688 21322695 6

Inversions: 13

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 2603633 2784712 OsKitaake06g035500
Inversion Chr10 7835839 7888304 2
Inversion Chr10 7835847 7888301 2
Inversion Chr6 15884383 16033425
Inversion Chr6 16969935 17093100
Inversion Chr7 17786651 18515941 2
Inversion Chr7 17786670 18515940 2
Inversion Chr6 20878719 20886978
Inversion Chr6 20878727 20886995
Inversion Chr5 23715155 23869442 OsKitaake05g209900
Inversion Chr5 23715159 23869445 OsKitaake05g209900
Inversion Chr1 38949035 39076432
Inversion Chr1 38949047 39076441

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 2782696 Chr6 15884372
Translocation Chr7 2782868 Chr6 15880663
Translocation Chr12 5755528 Chr10 11549071 OsKitaake12g069800
Translocation Chr12 5755536 Chr10 11549051 OsKitaake12g069800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	12935645	T-A	Hetero	INTERGENIC
SBS	Chr2	17055259	G-A	Homo	INTERGENIC
SBS	Chr3	18813515	T-G	Hetero	INTERGENIC
SBS	Chr3	19266506	A-G	Hetero	INTERGENIC
SBS	Chr3	21158606	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g234400
SBS	Chr3	22863761	G-A	Hetero	INTRON
SBS	Chr3	22863762	C-A	Hetero	INTRON
SBS	Chr3	25942219	T-G	Hetero	INTERGENIC
SBS	Chr3	26862433	G-A	Hetero	INTERGENIC
SBS	Chr3	36158982	A-T	Homo	INTRON
SBS	Chr4	1538502	C-T	Homo	INTERGENIC
SBS	Chr5	5395835	A-T	Hetero	INTERGENIC
SBS	Chr5	12165387	C-T	Hetero	INTERGENIC
SBS	Chr6	2157787	C-T	Hetero	INTERGENIC
SBS	Chr6	4257629	C-G	Hetero	INTERGENIC
SBS	Chr6	11726319	G-A	Homo	INTERGENIC
SBS	Chr6	18627726	C-T	Hetero	INTERGENIC
SBS	Chr7	5892767	T-C	Homo	INTERGENIC
SBS	Chr7	14396634	C-T	Homo	INTERGENIC
SBS	Chr7	18493471	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g150200
SBS	Chr7	26181936	G-C	Homo	INTERGENIC
SBS	Chr8	27120078	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g221500
SBS	Chr8	27120083	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g221500
SBS	Chr8	27130368	A-T	Hetero	INTERGENIC
SBS	Chr9	21688093	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	11224893	A-T	Hetero	INTERGENIC
SBS	Chr11	10813137	C-T	Hetero	INTERGENIC
SBS	Chr11	29398206	T-G	Homo	INTERGENIC
SBS	Chr12	9862663	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1396434	1396438	4
Deletion	Chr7	1563972	1564012	40
Deletion	Chr9	3318720	3318722	2
Deletion	Chr3	10698911	10698915	4	OsKitaake03g146900
Deletion	Chr10	11139204	11139219	15
Deletion	Chr6	16021001	16033000	11999	2
Deletion	Chr7	18498534	18498538	4	OsKitaake07g150300
Deletion	Chr10	21843503	21843505	2
Deletion	Chr7	23705506	23705509	3
Deletion	Chr3	24041811	24041816	5
Deletion	Chr11	24281317	24281319	2
Deletion	Chr5	24344053	24344065	12
Deletion	Chr4	35303353	35303383	30
Deletion	Chr4	36600160	36600167	7
Deletion	Chr1	41417162	41417163	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2603633	2784712	OsKitaake06g035500
Inversion	Chr10	7835839	7888304	2
Inversion	Chr10	7835847	7888301	2
Inversion	Chr6	15884383	16033425
Inversion	Chr6	16969935	17093100
Inversion	Chr7	17786651	18515941	2
Inversion	Chr7	17786670	18515940	2
Inversion	Chr6	20878719	20886978
Inversion	Chr6	20878727	20886995
Inversion	Chr5	23715155	23869442	OsKitaake05g209900
Inversion	Chr5	23715159	23869445	OsKitaake05g209900
Inversion	Chr1	38949035	39076432
Inversion	Chr1	38949047	39076441

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes