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Mutant Information

Mutant Name	FN3567-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3567-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13949993 C-T Homo INTERGENIC
SBS Chr1 14262458 C-T Homo INTERGENIC
SBS Chr1 30298808 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g298500
SBS Chr1 35298310 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g372200
SBS Chr1 35298311 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 35372407 C-T Hetero INTERGENIC
SBS Chr2 6297738 T-A Hetero INTRON
SBS Chr2 8203390 C-T Hetero INTERGENIC
SBS Chr2 13199746 C-T Hetero INTERGENIC
SBS Chr2 21129700 T-C Hetero INTERGENIC
SBS Chr2 28602279 T-C Hetero INTERGENIC
SBS Chr3 6679633 G-A Hetero INTERGENIC
SBS Chr3 13526593 C-A Hetero INTERGENIC
SBS Chr3 15452355 C-T Hetero INTERGENIC
SBS Chr3 23096539 C-G Hetero INTERGENIC
SBS Chr3 25065704 C-T Hetero INTERGENIC
SBS Chr3 27214167 C-T Hetero INTERGENIC
SBS Chr4 28140260 A-G Hetero INTERGENIC
SBS Chr5 14219610 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g109000
SBS Chr5 23947953 T-C Hetero INTERGENIC
SBS Chr6 1015733 A-G Homo INTRON
SBS Chr6 17727432 T-G Hetero INTRON
SBS Chr8 11603859 G-A Hetero INTERGENIC
SBS Chr8 19971950 G-T Hetero INTERGENIC
SBS Chr9 13354442 C-T Hetero INTERGENIC
SBS Chr9 14317866 T-C Hetero INTERGENIC
SBS Chr9 22122193 T-C Hetero INTERGENIC
SBS Chr10 795149 G-A Hetero INTRON
SBS Chr10 2329882 A-G Hetero INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 10644514 T-C Homo INTRON
SBS Chr12 21564108 A-T Hetero INTERGENIC
SBS Chr12 23289557 G-C Hetero INTERGENIC
SBS Chr12 26764008 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 711103 711111 8 OsKitaake04g005700
Deletion Chr12 903186 903187 1
Deletion Chr6 3192112 3192113 1 OsKitaake06g044600
Deletion Chr9 3477854 3477869 15
Deletion Chr3 4669412 4669414 2
Deletion Chr3 6221071 6221073 2
Deletion Chr1 13394001 13417000 22999
Deletion Chr7 13896012 13896018 6
Deletion Chr9 16365648 16365650 2
Deletion Chr9 16722001 16744000 21999 3
Deletion Chr3 17857759 17857760 1
Deletion Chr7 18806218 18806233 15
Deletion Chr2 18860040 18860042 2
Deletion Chr11 20635258 20635259 1
Deletion Chr9 22396549 22396550 1
Deletion Chr8 24671158 24671162 4
Deletion Chr5 24726102 24726107 5
Deletion Chr3 25987085 25987086 1
Deletion Chr8 28911235 28911239 4
Deletion Chr5 29090060 29090064 4
Deletion Chr1 29578654 29578655 1
Deletion Chr1 34308001 34318000 9999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33435146 33435158 11
Insertion Chr5 22200846 22200849 2
Insertion Chr7 28157969 28157971 1
Insertion Chr11 12147566 12147569 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 454956 1094174 OsKitaake11g004500
Inversion Chr11 454960 1094176 OsKitaake11g004500
Inversion Chr3 6940235 7753589 2
Inversion Chr3 6940237 7753591 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13949993	C-T	Homo	INTERGENIC
SBS	Chr1	14262458	C-T	Homo	INTERGENIC
SBS	Chr1	30298808	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g298500
SBS	Chr1	35298310	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g372200
SBS	Chr1	35298311	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	35372407	C-T	Hetero	INTERGENIC
SBS	Chr2	6297738	T-A	Hetero	INTRON
SBS	Chr2	8203390	C-T	Hetero	INTERGENIC
SBS	Chr2	13199746	C-T	Hetero	INTERGENIC
SBS	Chr2	21129700	T-C	Hetero	INTERGENIC
SBS	Chr2	28602279	T-C	Hetero	INTERGENIC
SBS	Chr3	6679633	G-A	Hetero	INTERGENIC
SBS	Chr3	13526593	C-A	Hetero	INTERGENIC
SBS	Chr3	15452355	C-T	Hetero	INTERGENIC
SBS	Chr3	23096539	C-G	Hetero	INTERGENIC
SBS	Chr3	25065704	C-T	Hetero	INTERGENIC
SBS	Chr3	27214167	C-T	Hetero	INTERGENIC
SBS	Chr4	28140260	A-G	Hetero	INTERGENIC
SBS	Chr5	14219610	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g109000
SBS	Chr5	23947953	T-C	Hetero	INTERGENIC
SBS	Chr6	1015733	A-G	Homo	INTRON
SBS	Chr6	17727432	T-G	Hetero	INTRON
SBS	Chr8	11603859	G-A	Hetero	INTERGENIC
SBS	Chr8	19971950	G-T	Hetero	INTERGENIC
SBS	Chr9	13354442	C-T	Hetero	INTERGENIC
SBS	Chr9	14317866	T-C	Hetero	INTERGENIC
SBS	Chr9	22122193	T-C	Hetero	INTERGENIC
SBS	Chr10	795149	G-A	Hetero	INTRON
SBS	Chr10	2329882	A-G	Hetero	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	10644514	T-C	Homo	INTRON
SBS	Chr12	21564108	A-T	Hetero	INTERGENIC
SBS	Chr12	23289557	G-C	Hetero	INTERGENIC
SBS	Chr12	26764008	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	711103	711111	8	OsKitaake04g005700
Deletion	Chr12	903186	903187	1
Deletion	Chr6	3192112	3192113	1	OsKitaake06g044600
Deletion	Chr9	3477854	3477869	15
Deletion	Chr3	4669412	4669414	2
Deletion	Chr3	6221071	6221073	2
Deletion	Chr1	13394001	13417000	22999
Deletion	Chr7	13896012	13896018	6
Deletion	Chr9	16365648	16365650	2
Deletion	Chr9	16722001	16744000	21999	3
Deletion	Chr3	17857759	17857760	1
Deletion	Chr7	18806218	18806233	15
Deletion	Chr2	18860040	18860042	2
Deletion	Chr11	20635258	20635259	1
Deletion	Chr9	22396549	22396550	1
Deletion	Chr8	24671158	24671162	4
Deletion	Chr5	24726102	24726107	5
Deletion	Chr3	25987085	25987086	1
Deletion	Chr8	28911235	28911239	4
Deletion	Chr5	29090060	29090064	4
Deletion	Chr1	29578654	29578655	1
Deletion	Chr1	34308001	34318000	9999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	454956	1094174	OsKitaake11g004500
Inversion	Chr11	454960	1094176	OsKitaake11g004500
Inversion	Chr3	6940235	7753589	2
Inversion	Chr3	6940237	7753591	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes