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Mutant Information

Mutant Name	FN3568-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3568-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4857009 T-A Hetero INTERGENIC
SBS Chr2 18103168 C-G Homo INTERGENIC
SBS Chr2 30142410 C-A Hetero INTERGENIC
SBS Chr3 14491761 A-G Homo INTERGENIC
SBS Chr3 14914097 G-A Homo INTERGENIC
SBS Chr4 2173933 G-A Hetero INTERGENIC
SBS Chr4 5279646 C-T Homo INTERGENIC
SBS Chr4 24641710 C-A Hetero INTERGENIC
SBS Chr4 28087754 A-G Homo INTERGENIC
SBS Chr4 29365561 T-A Hetero INTERGENIC
SBS Chr5 14923835 T-A Homo INTERGENIC
SBS Chr5 25583025 A-G Homo INTERGENIC
SBS Chr6 12106724 C-A Hetero INTERGENIC
SBS Chr6 24548033 T-A Homo NON_SYNONYMOUS_CODING OsKitaake06g217400
SBS Chr6 26746529 C-T Homo INTERGENIC
SBS Chr7 4568833 G-A Hetero INTRON
SBS Chr7 4568834 G-A Hetero INTRON
SBS Chr7 8385731 A-G Hetero INTERGENIC
SBS Chr8 10406215 G-A Hetero INTERGENIC
SBS Chr8 21552717 A-C Hetero INTERGENIC
SBS Chr8 21770595 T-C Hetero INTERGENIC
SBS Chr9 5324305 G-C Hetero INTERGENIC
SBS Chr9 6614870 A-G Hetero INTERGENIC
SBS Chr9 8091650 C-A Homo INTERGENIC
SBS Chr10 1121197 G-A Homo INTERGENIC
SBS Chr10 21713508 T-A Hetero INTERGENIC
SBS Chr11 7076595 A-T Homo INTERGENIC
SBS Chr11 13987606 C-T Homo INTERGENIC
SBS Chr11 25663519 A-G Homo INTERGENIC
SBS Chr12 21519852 A-C Homo INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1154908 1154917 9
Deletion Chr2 1305331 1305337 6 OsKitaake02g020200
Deletion Chr3 2108746 2108753 7
Deletion Chr2 2364478 2365056 578
Deletion Chr8 4073615 4073617 2
Deletion Chr7 4341607 4341610 3
Deletion Chr1 6617358 6617370 12 OsKitaake01g083200
Deletion Chr7 8002001 8233000 230999 15
Deletion Chr12 8062311 8062312 1
Deletion Chr4 9158229 9158231 2
Deletion Chr10 11605531 11605543 12
Deletion Chr4 11639605 11639607 2
Deletion Chr4 11941973 11941977 4
Deletion Chr12 13066668 13066677 9
Deletion Chr2 13263081 13263098 17
Deletion Chr7 17976998 17976999 1
Deletion Chr9 20489750 20489769 19
Deletion Chr1 20548431 20548433 2
Deletion Chr9 22525926 22525934 8 OsKitaake09g205900
Deletion Chr8 24425535 24425536 1
Deletion Chr12 24426850 24426857 7 OsKitaake12g197000
Deletion Chr4 25689177 25689183 6
Deletion Chr8 29094108 29094112 4
Deletion Chr11 29119899 29119903 4
Deletion Chr7 29474927 29474930 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42761903 42761911 7
Insertion Chr2 4304089 4304092 2
Insertion Chr10 17158516 17158518 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10672623 10832042
Inversion Chr9 10672631 10832055
Inversion Chr3 12883087 12957564 OsKitaake03g174200
Inversion Chr3 12883093 12957573 OsKitaake03g174200

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10672620 Chr2 11552466
Translocation Chr9 10832039 Chr2 11552576
Translocation Chr12 15354168 Chr1 7292801
Translocation Chr12 15354667 Chr1 7292797

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4857009	T-A	Hetero	INTERGENIC
SBS	Chr2	18103168	C-G	Homo	INTERGENIC
SBS	Chr2	30142410	C-A	Hetero	INTERGENIC
SBS	Chr3	14491761	A-G	Homo	INTERGENIC
SBS	Chr3	14914097	G-A	Homo	INTERGENIC
SBS	Chr4	2173933	G-A	Hetero	INTERGENIC
SBS	Chr4	5279646	C-T	Homo	INTERGENIC
SBS	Chr4	24641710	C-A	Hetero	INTERGENIC
SBS	Chr4	28087754	A-G	Homo	INTERGENIC
SBS	Chr4	29365561	T-A	Hetero	INTERGENIC
SBS	Chr5	14923835	T-A	Homo	INTERGENIC
SBS	Chr5	25583025	A-G	Homo	INTERGENIC
SBS	Chr6	12106724	C-A	Hetero	INTERGENIC
SBS	Chr6	24548033	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g217400
SBS	Chr6	26746529	C-T	Homo	INTERGENIC
SBS	Chr7	4568833	G-A	Hetero	INTRON
SBS	Chr7	4568834	G-A	Hetero	INTRON
SBS	Chr7	8385731	A-G	Hetero	INTERGENIC
SBS	Chr8	10406215	G-A	Hetero	INTERGENIC
SBS	Chr8	21552717	A-C	Hetero	INTERGENIC
SBS	Chr8	21770595	T-C	Hetero	INTERGENIC
SBS	Chr9	5324305	G-C	Hetero	INTERGENIC
SBS	Chr9	6614870	A-G	Hetero	INTERGENIC
SBS	Chr9	8091650	C-A	Homo	INTERGENIC
SBS	Chr10	1121197	G-A	Homo	INTERGENIC
SBS	Chr10	21713508	T-A	Hetero	INTERGENIC
SBS	Chr11	7076595	A-T	Homo	INTERGENIC
SBS	Chr11	13987606	C-T	Homo	INTERGENIC
SBS	Chr11	25663519	A-G	Homo	INTERGENIC
SBS	Chr12	21519852	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1154908	1154917	9
Deletion	Chr2	1305331	1305337	6	OsKitaake02g020200
Deletion	Chr3	2108746	2108753	7
Deletion	Chr2	2364478	2365056	578
Deletion	Chr8	4073615	4073617	2
Deletion	Chr7	4341607	4341610	3
Deletion	Chr1	6617358	6617370	12	OsKitaake01g083200
Deletion	Chr7	8002001	8233000	230999	15
Deletion	Chr12	8062311	8062312	1
Deletion	Chr4	9158229	9158231	2
Deletion	Chr10	11605531	11605543	12
Deletion	Chr4	11639605	11639607	2
Deletion	Chr4	11941973	11941977	4
Deletion	Chr12	13066668	13066677	9
Deletion	Chr2	13263081	13263098	17
Deletion	Chr7	17976998	17976999	1
Deletion	Chr9	20489750	20489769	19
Deletion	Chr1	20548431	20548433	2
Deletion	Chr9	22525926	22525934	8	OsKitaake09g205900
Deletion	Chr8	24425535	24425536	1
Deletion	Chr12	24426850	24426857	7	OsKitaake12g197000
Deletion	Chr4	25689177	25689183	6
Deletion	Chr8	29094108	29094112	4
Deletion	Chr11	29119899	29119903	4
Deletion	Chr7	29474927	29474930	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10672623	10832042
Inversion	Chr9	10672631	10832055
Inversion	Chr3	12883087	12957564	OsKitaake03g174200
Inversion	Chr3	12883093	12957573	OsKitaake03g174200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes