Search Kitaake

Mutant Information

Mutant Name	FN3569-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3569-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5095526 C-T Hetero INTERGENIC
SBS Chr1 6161632 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 6161633 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g078600
SBS Chr1 7794151 A-C Hetero INTERGENIC
SBS Chr1 25033011 A-T Hetero INTERGENIC
SBS Chr1 25040768 T-A Hetero INTERGENIC
SBS Chr1 25040769 A-T Hetero INTERGENIC
SBS Chr1 34002597 G-C Homo INTERGENIC
SBS Chr1 35937091 C-T Homo INTERGENIC
SBS Chr2 16043755 C-T Hetero INTERGENIC
SBS Chr2 16504310 C-T Hetero INTERGENIC
SBS Chr2 18115191 G-A Hetero INTERGENIC
SBS Chr3 8058741 A-C Homo UTR_5_PRIME
SBS Chr3 23709771 G-A Hetero INTERGENIC
SBS Chr3 29219423 A-G Hetero UTR_3_PRIME
SBS Chr3 33243736 C-T Hetero INTERGENIC
SBS Chr4 6416290 T-G Hetero INTERGENIC
SBS Chr4 13519188 C-A Hetero INTERGENIC
SBS Chr4 16108922 A-C Hetero INTERGENIC
SBS Chr4 16632671 G-A Hetero INTERGENIC
SBS Chr4 19904832 G-T Hetero INTERGENIC
SBS Chr4 20970154 G-T Homo INTERGENIC
SBS Chr4 30677396 A-T Hetero INTERGENIC
SBS Chr5 11441732 T-C Hetero INTERGENIC
SBS Chr5 13107563 T-G Hetero INTERGENIC
SBS Chr5 30064353 C-G Hetero INTERGENIC
SBS Chr5 30091226 G-T Hetero INTERGENIC
SBS Chr6 5559946 C-T Hetero INTERGENIC
SBS Chr7 4323829 A-T Hetero INTERGENIC
SBS Chr7 4934581 C-T Hetero INTERGENIC
SBS Chr7 6772903 C-T Hetero INTERGENIC
SBS Chr7 10603794 A-T Hetero INTRON
SBS Chr7 28463058 T-G Homo INTERGENIC
SBS Chr8 1043903 T-C Hetero INTERGENIC
SBS Chr8 9677035 G-C Hetero INTERGENIC
SBS Chr10 4119952 C-G Homo INTRON
SBS Chr10 12934959 T-C Hetero INTERGENIC
SBS Chr10 17401149 C-T Hetero INTERGENIC
SBS Chr10 19221973 A-G Hetero INTERGENIC
SBS Chr10 20763129 G-T Hetero INTERGENIC
SBS Chr11 1304813 G-A Homo INTERGENIC
SBS Chr11 2292385 C-T Homo INTERGENIC
SBS Chr11 3942240 G-C Homo INTERGENIC
SBS Chr12 6757209 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g076900
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 474776 474795 19
Deletion Chr4 612153 612155 2
Deletion Chr5 1548062 1548066 4
Deletion Chr7 4612682 4612683 1 OsKitaake07g057300
Deletion Chr7 4898001 4918000 19999 3
Deletion Chr9 5944878 5944899 21
Deletion Chr12 6407650 6407651 1
Deletion Chr8 6429782 6429787 5
Deletion Chr5 7013748 7013759 11
Deletion Chr8 7670913 7670921 8
Deletion Chr3 8572083 8572094 11
Deletion Chr3 9201683 9201685 2 OsKitaake03g125800
Deletion Chr5 9259641 9259652 11 OsKitaake05g086500
Deletion Chr8 9677210 9677213 3
Deletion Chr3 11793470 11793473 3
Deletion Chr3 13456001 13582000 125999
Deletion Chr10 16030280 16030282 2
Deletion Chr7 16978359 16978364 5
Deletion Chr5 19037655 19037657 2
Deletion Chr2 20674138 20674148 10
Deletion Chr1 25052796 25052816 20 OsKitaake01g242600
Deletion Chr4 27073495 27073496 1
Deletion Chr7 28234601 28234611 10
Deletion Chr4 29244660 29244661 1
Deletion Chr1 33484157 33484158 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr2 20674219 20674221 1
Insertion Chr6 6805674 6805677 2
Insertion Chr7 26012138 26012145 6
Insertion Chr7 28346703 28346713 9

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4027225 4049331 OsKitaake10g030600
Inversion Chr10 4027245 4049370 OsKitaake10g030600

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 13686771 Chr1 38844197 OsKitaake03g181200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5095526	C-T	Hetero	INTERGENIC
SBS	Chr1	6161632	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	6161633	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g078600
SBS	Chr1	7794151	A-C	Hetero	INTERGENIC
SBS	Chr1	25033011	A-T	Hetero	INTERGENIC
SBS	Chr1	25040768	T-A	Hetero	INTERGENIC
SBS	Chr1	25040769	A-T	Hetero	INTERGENIC
SBS	Chr1	34002597	G-C	Homo	INTERGENIC
SBS	Chr1	35937091	C-T	Homo	INTERGENIC
SBS	Chr2	16043755	C-T	Hetero	INTERGENIC
SBS	Chr2	16504310	C-T	Hetero	INTERGENIC
SBS	Chr2	18115191	G-A	Hetero	INTERGENIC
SBS	Chr3	8058741	A-C	Homo	UTR_5_PRIME
SBS	Chr3	23709771	G-A	Hetero	INTERGENIC
SBS	Chr3	29219423	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	33243736	C-T	Hetero	INTERGENIC
SBS	Chr4	6416290	T-G	Hetero	INTERGENIC
SBS	Chr4	13519188	C-A	Hetero	INTERGENIC
SBS	Chr4	16108922	A-C	Hetero	INTERGENIC
SBS	Chr4	16632671	G-A	Hetero	INTERGENIC
SBS	Chr4	19904832	G-T	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr4	30677396	A-T	Hetero	INTERGENIC
SBS	Chr5	11441732	T-C	Hetero	INTERGENIC
SBS	Chr5	13107563	T-G	Hetero	INTERGENIC
SBS	Chr5	30064353	C-G	Hetero	INTERGENIC
SBS	Chr5	30091226	G-T	Hetero	INTERGENIC
SBS	Chr6	5559946	C-T	Hetero	INTERGENIC
SBS	Chr7	4323829	A-T	Hetero	INTERGENIC
SBS	Chr7	4934581	C-T	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Hetero	INTERGENIC
SBS	Chr7	10603794	A-T	Hetero	INTRON
SBS	Chr7	28463058	T-G	Homo	INTERGENIC
SBS	Chr8	1043903	T-C	Hetero	INTERGENIC
SBS	Chr8	9677035	G-C	Hetero	INTERGENIC
SBS	Chr10	4119952	C-G	Homo	INTRON
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr10	17401149	C-T	Hetero	INTERGENIC
SBS	Chr10	19221973	A-G	Hetero	INTERGENIC
SBS	Chr10	20763129	G-T	Hetero	INTERGENIC
SBS	Chr11	1304813	G-A	Homo	INTERGENIC
SBS	Chr11	2292385	C-T	Homo	INTERGENIC
SBS	Chr11	3942240	G-C	Homo	INTERGENIC
SBS	Chr12	6757209	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g076900
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	474776	474795	19
Deletion	Chr4	612153	612155	2
Deletion	Chr5	1548062	1548066	4
Deletion	Chr7	4612682	4612683	1	OsKitaake07g057300
Deletion	Chr7	4898001	4918000	19999	3
Deletion	Chr9	5944878	5944899	21
Deletion	Chr12	6407650	6407651	1
Deletion	Chr8	6429782	6429787	5
Deletion	Chr5	7013748	7013759	11
Deletion	Chr8	7670913	7670921	8
Deletion	Chr3	8572083	8572094	11
Deletion	Chr3	9201683	9201685	2	OsKitaake03g125800
Deletion	Chr5	9259641	9259652	11	OsKitaake05g086500
Deletion	Chr8	9677210	9677213	3
Deletion	Chr3	11793470	11793473	3
Deletion	Chr3	13456001	13582000	125999
Deletion	Chr10	16030280	16030282	2
Deletion	Chr7	16978359	16978364	5
Deletion	Chr5	19037655	19037657	2
Deletion	Chr2	20674138	20674148	10
Deletion	Chr1	25052796	25052816	20	OsKitaake01g242600
Deletion	Chr4	27073495	27073496	1
Deletion	Chr7	28234601	28234611	10
Deletion	Chr4	29244660	29244661	1
Deletion	Chr1	33484157	33484158	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4027225	4049331	OsKitaake10g030600
Inversion	Chr10	4027245	4049370	OsKitaake10g030600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes