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Mutant Information

Mutant Name	FN3570-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3570-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3759672 G-C Hetero INTRON
SBS Chr1 6611480 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g083200
SBS Chr1 7257531 G-T Hetero INTRON
SBS Chr1 21974706 C-T Hetero INTRON
SBS Chr1 43971692 C-T Hetero INTERGENIC
SBS Chr2 3420067 T-A Hetero INTRON
SBS Chr2 7543840 G-A Hetero INTERGENIC
SBS Chr2 17224637 A-G Hetero UTR_3_PRIME
SBS Chr2 22648215 G-T Hetero INTERGENIC
SBS Chr3 5374535 C-A Hetero INTRON
SBS Chr3 14764378 C-T Hetero INTERGENIC
SBS Chr3 24303578 G-A Hetero INTERGENIC
SBS Chr3 34013035 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g367400
SBS Chr4 1222120 T-C Hetero INTERGENIC
SBS Chr4 1517651 A-G Hetero INTERGENIC
SBS Chr4 2610174 C-T Hetero INTERGENIC
SBS Chr4 6192894 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g030800
SBS Chr4 7286652 G-A Hetero INTERGENIC
SBS Chr4 11247088 A-G Hetero INTERGENIC
SBS Chr4 16823070 A-G Hetero INTERGENIC
SBS Chr5 6231429 G-A Hetero INTERGENIC
SBS Chr5 6231436 G-C Hetero INTERGENIC
SBS Chr5 8117053 C-T Hetero INTERGENIC
SBS Chr5 9168585 T-G Hetero INTERGENIC
SBS Chr5 9556742 T-A Hetero INTRON
SBS Chr5 18361925 T-A Homo INTERGENIC
SBS Chr5 26560744 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g236200
SBS Chr6 9970980 G-A Hetero INTERGENIC
SBS Chr6 9970982 C-T Hetero INTERGENIC
SBS Chr6 14534310 T-A Hetero INTERGENIC
SBS Chr6 15941620 G-A Hetero INTERGENIC
SBS Chr6 16965154 G-A Hetero INTRON
SBS Chr6 28297755 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g258600
SBS Chr7 16900927 T-C Hetero INTERGENIC
SBS Chr7 22734431 T-C Hetero UTR_3_PRIME
SBS Chr8 11876916 A-G Hetero INTERGENIC
SBS Chr8 26036215 A-T Homo INTERGENIC
SBS Chr8 26036216 C-G Homo INTERGENIC
SBS Chr9 11414842 T-C Hetero INTERGENIC
SBS Chr9 15185415 C-T Hetero INTERGENIC
SBS Chr9 19415032 C-T Hetero INTERGENIC
SBS Chr9 22231042 G-T Hetero INTERGENIC
SBS Chr10 6832911 G-A Hetero INTERGENIC
SBS Chr11 3542687 G-A Hetero INTRON
SBS Chr11 3686682 T-A Hetero INTERGENIC
SBS Chr12 1070061 T-A Hetero INTRON
SBS Chr12 5425952 A-T Hetero INTERGENIC
SBS Chr12 7746296 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 615099 615101 2
Deletion Chr2 1561001 1593000 31999 13
Deletion Chr5 6021001 6230000 208999 22
Deletion Chr5 6766001 7394000 627999 55
Deletion Chr4 10335753 10335754 1
Deletion Chr3 13701273 13701275 2
Deletion Chr3 15248642 15248655 13 OsKitaake03g197700
Deletion Chr10 18741243 18741247 4
Deletion Chr4 19327669 19327675 6
Deletion Chr6 21185001 21224000 38999 2
Deletion Chr1 24490432 24490446 14
Deletion Chr8 24740420 24740433 13 OsKitaake08g193100
Deletion Chr5 25759113 25759115 2
Deletion Chr3 29181563 29181565 2
Deletion Chr1 41184133 41184137 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13037442 13037445 2
Insertion Chr4 31505107 31505111 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 5985088 6019950
Inversion Chr5 5985096 6230618
Inversion Chr1 19834837 20003874 2
Inversion Chr12 26149831 26268669 OsKitaake12g218100
Inversion Chr12 26149877 26268696 OsKitaake12g218100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 24924451 Chr3 10399013
Translocation Chr8 26006651 Chr1 24117493
Translocation Chr8 26006678 Chr1 24116752
Translocation Chr8 26006679 Chr2 28760112 OsKitaake02g289400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3759672	G-C	Hetero	INTRON
SBS	Chr1	6611480	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g083200
SBS	Chr1	7257531	G-T	Hetero	INTRON
SBS	Chr1	21974706	C-T	Hetero	INTRON
SBS	Chr1	43971692	C-T	Hetero	INTERGENIC
SBS	Chr2	3420067	T-A	Hetero	INTRON
SBS	Chr2	7543840	G-A	Hetero	INTERGENIC
SBS	Chr2	17224637	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	22648215	G-T	Hetero	INTERGENIC
SBS	Chr3	5374535	C-A	Hetero	INTRON
SBS	Chr3	14764378	C-T	Hetero	INTERGENIC
SBS	Chr3	24303578	G-A	Hetero	INTERGENIC
SBS	Chr3	34013035	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g367400
SBS	Chr4	1222120	T-C	Hetero	INTERGENIC
SBS	Chr4	1517651	A-G	Hetero	INTERGENIC
SBS	Chr4	2610174	C-T	Hetero	INTERGENIC
SBS	Chr4	6192894	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g030800
SBS	Chr4	7286652	G-A	Hetero	INTERGENIC
SBS	Chr4	11247088	A-G	Hetero	INTERGENIC
SBS	Chr4	16823070	A-G	Hetero	INTERGENIC
SBS	Chr5	6231429	G-A	Hetero	INTERGENIC
SBS	Chr5	6231436	G-C	Hetero	INTERGENIC
SBS	Chr5	8117053	C-T	Hetero	INTERGENIC
SBS	Chr5	9168585	T-G	Hetero	INTERGENIC
SBS	Chr5	9556742	T-A	Hetero	INTRON
SBS	Chr5	18361925	T-A	Homo	INTERGENIC
SBS	Chr5	26560744	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g236200
SBS	Chr6	9970980	G-A	Hetero	INTERGENIC
SBS	Chr6	9970982	C-T	Hetero	INTERGENIC
SBS	Chr6	14534310	T-A	Hetero	INTERGENIC
SBS	Chr6	15941620	G-A	Hetero	INTERGENIC
SBS	Chr6	16965154	G-A	Hetero	INTRON
SBS	Chr6	28297755	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g258600
SBS	Chr7	16900927	T-C	Hetero	INTERGENIC
SBS	Chr7	22734431	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	11876916	A-G	Hetero	INTERGENIC
SBS	Chr8	26036215	A-T	Homo	INTERGENIC
SBS	Chr8	26036216	C-G	Homo	INTERGENIC
SBS	Chr9	11414842	T-C	Hetero	INTERGENIC
SBS	Chr9	15185415	C-T	Hetero	INTERGENIC
SBS	Chr9	19415032	C-T	Hetero	INTERGENIC
SBS	Chr9	22231042	G-T	Hetero	INTERGENIC
SBS	Chr10	6832911	G-A	Hetero	INTERGENIC
SBS	Chr11	3542687	G-A	Hetero	INTRON
SBS	Chr11	3686682	T-A	Hetero	INTERGENIC
SBS	Chr12	1070061	T-A	Hetero	INTRON
SBS	Chr12	5425952	A-T	Hetero	INTERGENIC
SBS	Chr12	7746296	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	615099	615101	2
Deletion	Chr2	1561001	1593000	31999	13
Deletion	Chr5	6021001	6230000	208999	22
Deletion	Chr5	6766001	7394000	627999	55
Deletion	Chr4	10335753	10335754	1
Deletion	Chr3	13701273	13701275	2
Deletion	Chr3	15248642	15248655	13	OsKitaake03g197700
Deletion	Chr10	18741243	18741247	4
Deletion	Chr4	19327669	19327675	6
Deletion	Chr6	21185001	21224000	38999	2
Deletion	Chr1	24490432	24490446	14
Deletion	Chr8	24740420	24740433	13	OsKitaake08g193100
Deletion	Chr5	25759113	25759115	2
Deletion	Chr3	29181563	29181565	2
Deletion	Chr1	41184133	41184137	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5985088	6019950
Inversion	Chr5	5985096	6230618
Inversion	Chr1	19834837	20003874	2
Inversion	Chr12	26149831	26268669	OsKitaake12g218100
Inversion	Chr12	26149877	26268696	OsKitaake12g218100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes