Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3571-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3571-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2471525 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 8665193 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 12508809 | G-A | Homo | INTRON | |
| SBS | Chr1 | 15879610 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23288041 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g222600 |
| SBS | Chr2 | 13013756 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 25085888 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 29218709 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g293900 |
| SBS | Chr3 | 14690464 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16405356 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18205939 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23223598 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30899715 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 4736252 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 5291380 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9355241 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14002770 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3441477 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10827921 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 23713298 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27720715 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26929136 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4369434 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 8662126 | C-G | Homo | INTRON | |
| SBS | Chr9 | 15105797 | T-A | Hetero | INTRON | |
| SBS | Chr10 | 5361286 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6135088 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6499739 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9173055 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20756290 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13958366 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 18167906 | C-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3572462 | 3572467 | 5 | |
| Deletion | Chr12 | 4615594 | 4615597 | 3 | OsKitaake12g061100 |
| Deletion | Chr4 | 4801841 | 4801844 | 3 | |
| Deletion | Chr9 | 5015150 | 5015151 | 1 | |
| Deletion | Chr8 | 10698465 | 10698471 | 6 | |
| Deletion | Chr5 | 10827844 | 10827846 | 2 | |
| Deletion | Chr12 | 18167883 | 18167893 | 10 | |
| Deletion | Chr12 | 18442320 | 18442337 | 17 | |
| Deletion | Chr10 | 20545470 | 20545480 | 10 | |
| Deletion | Chr6 | 21229528 | 21229536 | 8 | |
| Deletion | Chr2 | 32094571 | 32094574 | 3 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 24680984 | 24680986 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 2656865 | 3655932 | OsKitaake10g027300 |
| Inversion | Chr10 | 2656868 | 3655930 | OsKitaake10g027300 |
| Inversion | Chr7 | 7606397 | 7775860 | |
| Inversion | Chr7 | 7778022 | 8593405 | OsKitaake07g092250 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 7778030 | Chr5 | 23643323 | |
| Translocation | Chr7 | 7778253 | Chr5 | 23643327 |