Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3572-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3572-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12197036 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19197478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 19427414 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 13175510 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 13527313 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17641699 | G-T | Homo | INTRON | |
| SBS | Chr3 | 26242676 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 32455877 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1988540 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 13512263 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 29313442 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g223100 |
| SBS | Chr6 | 6073752 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g080000 |
| SBS | Chr6 | 10590606 | G-C | Homo | INTRON | |
| SBS | Chr6 | 20917161 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 996224 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 20188630 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 24890754 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 14088176 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 14088178 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 13267962 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 3886993 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4585147 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1736333 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 2982408 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 10492047 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 10492049 | G-A | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 1826250 | 1826258 | 8 | OsKitaake06g022300 |
| Deletion | Chr9 | 3153464 | 3153484 | 20 | |
| Deletion | Chr11 | 5236991 | 5237010 | 19 | |
| Deletion | Chr11 | 6240824 | 6240825 | 1 | OsKitaake11g074900 |
| Deletion | Chr11 | 13691778 | 13691779 | 1 | |
| Deletion | Chr2 | 18000001 | 18065000 | 64999 | 3 |
| Deletion | Chr11 | 19690001 | 20061000 | 370999 | 36 |
| Deletion | Chr7 | 26060929 | 26060943 | 14 | |
| Deletion | Chr7 | 26466204 | 26466206 | 2 | |
| Deletion | Chr2 | 27433991 | 27433997 | 6 | |
| Deletion | Chr6 | 27716756 | 27716759 | 3 | |
| Deletion | Chr3 | 28677001 | 28756000 | 78999 | 12 |
| Deletion | Chr4 | 36957931 | 36957933 | 2 | OsKitaake04g323701 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 29801763 | 29801766 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 8068381 | 8243958 | OsKitaake01g101100 |
| Inversion | Chr1 | 8068386 | 8243963 | OsKitaake01g101100 |
| Inversion | Chr3 | 28621697 | 28805373 | OsKitaake03g298500 |
| Inversion | Chr3 | 28621712 | 28805383 | OsKitaake03g298500 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 28290037 | Chr1 | 17976801 | OsKitaake01g182400 |