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| Mutant Information |
|---|
| Mutant Name | FN3573-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3573-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 18
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20429642 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 22465015 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5704858 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9294185 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33505397 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15856552 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 20248543 | C-T | Hetero | START_GAINED | |
| SBS | Chr5 | 30065353 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 22520628 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 10348897 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 16359170 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11288849 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19601316 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 20095196 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 20573274 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 29117662 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8792188 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22264302 | G-T | Hetero | INTRON |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 20242 | 20244 | 2 | OsKitaake12g000100 |
| Deletion | Chr5 | 912411 | 912441 | 30 | |
| Deletion | Chr4 | 5550001 | 5705000 | 154999 | 8 |
| Deletion | Chr7 | 8464411 | 8464484 | 73 | |
| Deletion | Chr11 | 10128445 | 10128467 | 22 | |
| Deletion | Chr6 | 17510945 | 17510946 | 1 | |
| Deletion | Chr12 | 23731567 | 23731569 | 2 | |
| Deletion | Chr4 | 26017707 | 26017711 | 4 | |
| Deletion | Chr6 | 30062709 | 30062715 | 6 | |
| Deletion | Chr5 | 30065323 | 30065338 | 15 | |
| Deletion | Chr4 | 34645001 | 34706000 | 60999 | 6 |
| Deletion | Chr2 | 35153698 | 35153702 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 14816686 | 14816689 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 34650379 | 35307406 | OsKitaake04g289300 |
| Inversion | Chr4 | 34704851 | 35307407 | OsKitaake04g289700 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 11426265 | Chr1 | 6305432 |