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Mutant Information

Mutant Name	FN3574-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3574-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6746595 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g085000
SBS Chr1 26710295 T-C Hetero INTERGENIC
SBS Chr2 4734104 G-A Hetero STOP_GAINED OsKitaake02g065500
SBS Chr2 9360782 A-G Homo INTERGENIC
SBS Chr2 11877676 C-T Hetero INTERGENIC
SBS Chr2 14340608 G-T Hetero INTERGENIC
SBS Chr2 16463860 T-C Hetero INTERGENIC
SBS Chr2 16463862 C-A Hetero INTERGENIC
SBS Chr2 17082231 T-G Hetero INTERGENIC
SBS Chr2 17082232 G-T Hetero INTERGENIC
SBS Chr2 17082233 C-T Hetero INTERGENIC
SBS Chr4 26844169 A-T Homo INTERGENIC
SBS Chr4 34676505 C-T Homo INTERGENIC
SBS Chr5 2211443 G-A Hetero INTERGENIC
SBS Chr5 6032637 A-G Hetero INTERGENIC
SBS Chr5 6675908 C-A Hetero INTERGENIC
SBS Chr5 12279881 T-G Hetero INTERGENIC
SBS Chr5 16531763 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g126400
SBS Chr5 18067533 G-A Hetero INTERGENIC
SBS Chr8 1137046 A-G Hetero INTERGENIC
SBS Chr9 10818881 A-G Hetero INTERGENIC
SBS Chr9 11184500 A-G Hetero INTERGENIC
SBS Chr9 17415425 C-A Hetero INTERGENIC
SBS Chr10 16039854 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g106400
SBS Chr11 10165460 G-A Hetero INTERGENIC
SBS Chr11 23171188 A-G Hetero INTERGENIC
SBS Chr11 26265176 G-T Homo NON_SYNONYMOUS_CODING OsKitaake11g212200
SBS Chr11 26265177 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g212200
SBS Chr12 12243680 A-G Homo INTRON
SBS Chr12 23292865 C-G Homo INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 5606819 5606823 4
Deletion Chr4 5760436 5760446 10
Deletion Chr11 7146793 7146797 4
Deletion Chr2 9359999 9360000 1
Deletion Chr6 10560476 10560481 5
Deletion Chr11 10574316 10574323 7
Deletion Chr5 11933764 11933771 7
Deletion Chr2 14215230 14215232 2
Deletion Chr7 16322780 16322789 9
Deletion Chr7 17015363 17015364 1
Deletion Chr6 18867761 18867765 4
Deletion Chr7 21820916 21820918 2
Deletion Chr6 22398938 22398941 3
Deletion Chr4 28602613 28602614 1
Deletion Chr4 32995977 32995983 6
Deletion Chr1 41120054 41120055 1
Deletion Chr1 43638903 43638909 6 OsKitaake01g484700

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9480027 9480030 2
Insertion Chr2 27269407 27269410 2
Insertion Chr7 5277268 5277271 2
Insertion Chr7 17214624 17214633 8

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 435838 866063 2
Inversion Chr9 435840 866070 2
Inversion Chr9 10639918 11124852
Inversion Chr9 10639933 11124861

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 8848724 Chr7 26707391 OsKitaake11g095000
Translocation Chr11 8851145 Chr7 26707370
Translocation Chr2 14335262 Chr1 6747996 OsKitaake01g085000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6746595	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g085000
SBS	Chr1	26710295	T-C	Hetero	INTERGENIC
SBS	Chr2	4734104	G-A	Hetero	STOP_GAINED	OsKitaake02g065500
SBS	Chr2	9360782	A-G	Homo	INTERGENIC
SBS	Chr2	11877676	C-T	Hetero	INTERGENIC
SBS	Chr2	14340608	G-T	Hetero	INTERGENIC
SBS	Chr2	16463860	T-C	Hetero	INTERGENIC
SBS	Chr2	16463862	C-A	Hetero	INTERGENIC
SBS	Chr2	17082231	T-G	Hetero	INTERGENIC
SBS	Chr2	17082232	G-T	Hetero	INTERGENIC
SBS	Chr2	17082233	C-T	Hetero	INTERGENIC
SBS	Chr4	26844169	A-T	Homo	INTERGENIC
SBS	Chr4	34676505	C-T	Homo	INTERGENIC
SBS	Chr5	2211443	G-A	Hetero	INTERGENIC
SBS	Chr5	6032637	A-G	Hetero	INTERGENIC
SBS	Chr5	6675908	C-A	Hetero	INTERGENIC
SBS	Chr5	12279881	T-G	Hetero	INTERGENIC
SBS	Chr5	16531763	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g126400
SBS	Chr5	18067533	G-A	Hetero	INTERGENIC
SBS	Chr8	1137046	A-G	Hetero	INTERGENIC
SBS	Chr9	10818881	A-G	Hetero	INTERGENIC
SBS	Chr9	11184500	A-G	Hetero	INTERGENIC
SBS	Chr9	17415425	C-A	Hetero	INTERGENIC
SBS	Chr10	16039854	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g106400
SBS	Chr11	10165460	G-A	Hetero	INTERGENIC
SBS	Chr11	23171188	A-G	Hetero	INTERGENIC
SBS	Chr11	26265176	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g212200
SBS	Chr11	26265177	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g212200
SBS	Chr12	12243680	A-G	Homo	INTRON
SBS	Chr12	23292865	C-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	5606819	5606823	4
Deletion	Chr4	5760436	5760446	10
Deletion	Chr11	7146793	7146797	4
Deletion	Chr2	9359999	9360000	1
Deletion	Chr6	10560476	10560481	5
Deletion	Chr11	10574316	10574323	7
Deletion	Chr5	11933764	11933771	7
Deletion	Chr2	14215230	14215232	2
Deletion	Chr7	16322780	16322789	9
Deletion	Chr7	17015363	17015364	1
Deletion	Chr6	18867761	18867765	4
Deletion	Chr7	21820916	21820918	2
Deletion	Chr6	22398938	22398941	3
Deletion	Chr4	28602613	28602614	1
Deletion	Chr4	32995977	32995983	6
Deletion	Chr1	41120054	41120055	1
Deletion	Chr1	43638903	43638909	6	OsKitaake01g484700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	435838	866063	2
Inversion	Chr9	435840	866070	2
Inversion	Chr9	10639918	11124852
Inversion	Chr9	10639933	11124861

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes