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| Mutant Information |
|---|
| Mutant Name | FN3575-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3575-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3994610 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21270437 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 30848453 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 37390120 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 41385938 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3487883 | T-C | Homo | INTRON | |
| SBS | Chr2 | 13297254 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 20852519 | T-A | Homo | INTRON | |
| SBS | Chr4 | 7550199 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 31182230 | A-G | Hetero | START_GAINED | |
| SBS | Chr4 | 31505191 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1998777 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2115993 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g023700 |
| SBS | Chr7 | 9176647 | A-T | Homo | INTRON | |
| SBS | Chr7 | 19534726 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 9786375 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 13101510 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 4083542 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5313824 | T-G | Homo | INTERGENIC | |
| SBS | Chr11 | 27457405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4006113 | G-A | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 603748 | 603760 | 12 | |
| Deletion | Chr2 | 3330969 | 3330985 | 16 | |
| Deletion | Chr2 | 3340856 | 3340874 | 18 | |
| Deletion | Chr3 | 3643043 | 3643056 | 13 | |
| Deletion | Chr1 | 4457546 | 4457548 | 2 | |
| Deletion | Chr12 | 6356667 | 6356670 | 3 | |
| Deletion | Chr11 | 9316945 | 9316964 | 19 | OsKitaake11g097600 |
| Deletion | Chr5 | 9906063 | 9906065 | 2 | |
| Deletion | Chr12 | 10184125 | 10184130 | 5 | |
| Deletion | Chr6 | 11387543 | 11387550 | 7 | |
| Deletion | Chr3 | 13484706 | 13484719 | 13 | |
| Deletion | Chr3 | 13813389 | 13813390 | 1 | |
| Deletion | Chr9 | 15581963 | 15581964 | 1 | |
| Deletion | Chr7 | 21007340 | 21007345 | 5 | |
| Deletion | Chr1 | 21308049 | 21308064 | 15 | |
| Deletion | Chr2 | 24629219 | 24629225 | 6 | |
| Deletion | Chr11 | 29210920 | 29210929 | 9 | |
| Deletion | Chr4 | 32725522 | 32725526 | 4 | |
| Deletion | Chr1 | 42951560 | 42951561 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 27689455 | 27689459 | 3 | |
| Insertion | Chr4 | 21583627 | 21583629 | 1 | |
| Insertion | Chr12 | 11747373 | 11747376 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 32347644 | 32348781 | OsKitaake01g326900 |
| Inversion | Chr1 | 32347657 | 32348795 | OsKitaake01g326900 |