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Mutant Information

Mutant Name	FN3576-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3576-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6656533 G-C Hetero INTERGENIC
SBS Chr1 6796066 T-C Homo INTERGENIC
SBS Chr1 15978551 C-T Homo INTERGENIC
SBS Chr2 5786674 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g079900
SBS Chr2 18088641 C-T Hetero INTERGENIC
SBS Chr2 31334039 A-G Homo SPLICE_SITE_REGION
SBS Chr3 20568045 G-A Hetero INTERGENIC
SBS Chr3 20568046 G-A Hetero INTERGENIC
SBS Chr4 4986360 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g022600
SBS Chr4 14473890 A-C Hetero INTERGENIC
SBS Chr5 14278741 G-T Homo INTERGENIC
SBS Chr5 17494307 G-A Hetero INTRON
SBS Chr5 21551085 C-A Hetero INTERGENIC
SBS Chr5 22735446 G-A Hetero INTERGENIC
SBS Chr5 29624232 C-A Hetero INTERGENIC
SBS Chr5 29867604 C-G Hetero INTERGENIC
SBS Chr6 5246623 G-A Hetero INTERGENIC
SBS Chr6 13136679 T-G Hetero INTERGENIC
SBS Chr6 26371674 A-T Homo INTRON
SBS Chr7 1825001 T-C Homo INTRON
SBS Chr7 14967307 C-T Homo INTERGENIC
SBS Chr9 15797106 A-G Homo INTRON
SBS Chr10 10745538 C-T Homo INTERGENIC
SBS Chr10 13240926 C-T Homo INTERGENIC
SBS Chr10 18829062 T-G Hetero INTERGENIC
SBS Chr12 13807930 A-T Homo INTERGENIC
SBS Chr12 18354639 T-G Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 462508 462511 3
Deletion Chr4 1231001 1593000 361999 12
Deletion Chr7 2148857 2148861 4
Deletion Chr1 9199522 9199537 15
Deletion Chr9 10295427 10295428 1
Deletion Chr5 10904356 10904357 1
Deletion Chr7 11856100 11856107 7
Deletion Chr8 16082267 16082269 2
Deletion Chr2 16704001 16783000 78999 4
Deletion Chr2 17469001 17496000 26999 2
Deletion Chr2 18093001 18114000 20999 3
Deletion Chr12 18385214 18385215 1
Deletion Chr3 20823962 20823963 1
Deletion Chr8 22072011 22072021 10
Deletion Chr1 22623150 22623151 1
Deletion Chr1 23319917 23319936 19
Deletion Chr12 25768561 25768562 1
Deletion Chr11 29551926 29551929 3
Deletion Chr4 29817770 29817783 13
Deletion Chr1 37725681 37725694 13 OsKitaake01g402600

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 6525274 6525277 2

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 447428 1231006
Inversion Chr9 9285935 10040034
Inversion Chr2 16703014 17467613 OsKitaake02g175600
Inversion Chr2 17478135 18113824 2
Inversion Chr2 17478217 18094171 2
Inversion Chr2 17551223 17968762 OsKitaake02g176100
Inversion Chr10 17702850 18406003 OsKitaake10g121600
Inversion Chr10 17702858 18406011 OsKitaake10g121600
Inversion Chr2 30208481 30405920
Inversion Chr2 30208510 30424482 OsKitaake02g309850

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10189968 Chr2 30405919
Translocation Chr9 12354672 Chr2 30424466 OsKitaake02g309850
Translocation Chr10 12552654 Chr2 16704012

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6656533	G-C	Hetero	INTERGENIC
SBS	Chr1	6796066	T-C	Homo	INTERGENIC
SBS	Chr1	15978551	C-T	Homo	INTERGENIC
SBS	Chr2	5786674	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g079900
SBS	Chr2	18088641	C-T	Hetero	INTERGENIC
SBS	Chr2	31334039	A-G	Homo	SPLICE_SITE_REGION
SBS	Chr3	20568045	G-A	Hetero	INTERGENIC
SBS	Chr3	20568046	G-A	Hetero	INTERGENIC
SBS	Chr4	4986360	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g022600
SBS	Chr4	14473890	A-C	Hetero	INTERGENIC
SBS	Chr5	14278741	G-T	Homo	INTERGENIC
SBS	Chr5	17494307	G-A	Hetero	INTRON
SBS	Chr5	21551085	C-A	Hetero	INTERGENIC
SBS	Chr5	22735446	G-A	Hetero	INTERGENIC
SBS	Chr5	29624232	C-A	Hetero	INTERGENIC
SBS	Chr5	29867604	C-G	Hetero	INTERGENIC
SBS	Chr6	5246623	G-A	Hetero	INTERGENIC
SBS	Chr6	13136679	T-G	Hetero	INTERGENIC
SBS	Chr6	26371674	A-T	Homo	INTRON
SBS	Chr7	1825001	T-C	Homo	INTRON
SBS	Chr7	14967307	C-T	Homo	INTERGENIC
SBS	Chr9	15797106	A-G	Homo	INTRON
SBS	Chr10	10745538	C-T	Homo	INTERGENIC
SBS	Chr10	13240926	C-T	Homo	INTERGENIC
SBS	Chr10	18829062	T-G	Hetero	INTERGENIC
SBS	Chr12	13807930	A-T	Homo	INTERGENIC
SBS	Chr12	18354639	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	462508	462511	3
Deletion	Chr4	1231001	1593000	361999	12
Deletion	Chr7	2148857	2148861	4
Deletion	Chr1	9199522	9199537	15
Deletion	Chr9	10295427	10295428	1
Deletion	Chr5	10904356	10904357	1
Deletion	Chr7	11856100	11856107	7
Deletion	Chr8	16082267	16082269	2
Deletion	Chr2	16704001	16783000	78999	4
Deletion	Chr2	17469001	17496000	26999	2
Deletion	Chr2	18093001	18114000	20999	3
Deletion	Chr12	18385214	18385215	1
Deletion	Chr3	20823962	20823963	1
Deletion	Chr8	22072011	22072021	10
Deletion	Chr1	22623150	22623151	1
Deletion	Chr1	23319917	23319936	19
Deletion	Chr12	25768561	25768562	1
Deletion	Chr11	29551926	29551929	3
Deletion	Chr4	29817770	29817783	13
Deletion	Chr1	37725681	37725694	13	OsKitaake01g402600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	447428	1231006
Inversion	Chr9	9285935	10040034
Inversion	Chr2	16703014	17467613	OsKitaake02g175600
Inversion	Chr2	17478135	18113824	2
Inversion	Chr2	17478217	18094171	2
Inversion	Chr2	17551223	17968762	OsKitaake02g176100
Inversion	Chr10	17702850	18406003	OsKitaake10g121600
Inversion	Chr10	17702858	18406011	OsKitaake10g121600
Inversion	Chr2	30208481	30405920
Inversion	Chr2	30208510	30424482	OsKitaake02g309850

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes